View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_12 (Length: 522)
Name: NF7765_low_12
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Complemental strand, 36569911 - 36569423
Alignment:
| Q |
17 |
agcttcaacacatacatatgaaaacaaagactaaactaactatccacccaaaccctattacaatattcacctatatannnnnnnnnnnnngagaggacaa |
116 |
Q |
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| T |
36569911 |
agcttcaacacatacatatgaaaacaaagactaaactaactacccacccaaaccctattacaatattcacctatatatttttctttttttgagaggacaa |
36569812 |
T |
|
| Q |
117 |
tattcacctatatattacatactccatgtaagaaaaaacattctccaaaatcagtgtttgcattacaagcaaagcaatacttctttccattccaaataca |
216 |
Q |
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| T |
36569811 |
tattcacctatatattacatactccatgtaagaaaaaacattctccaaaatcagtgtttgcattacaagcaaagcaatacttctttccattccaaataca |
36569712 |
T |
|
| Q |
217 |
tacaaaacacaaaagcaaagtcatcatataaaatttccaccaccatgactaaagaatgtgacttccacggagacgaacgccgccaactcatccgtcgcat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36569711 |
cacaaaacacaaaagcaaagtcatcatataaaatttccaccaccatgactaaagaatgtgacttccacggagatgaacgccgccaactcatccgtcgcat |
36569612 |
T |
|
| Q |
317 |
attcgccgcaatcctcagctttataatcctcatactcttcgtaatcttccttatttggattatcctccggccaaccaaaccccgtttcatcctccaagac |
416 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
36569611 |
atttgccgcaatcctcagctttataatcctcatactcttcgtaatcttccttatttggatcatcctccgaccaaccaaaccccgtttcatcctccaagac |
36569512 |
T |
|
| Q |
417 |
gcaaccgtcttcgccttcaacctctcctccaccggagaaacaccatcctcaaccacccctacacccaacaccataaccctcactattca |
505 |
Q |
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| T |
36569511 |
gcaaccgtcttcgccttcaacctctcctccaccggagaaacaccatcctcaaccacccctacacccaacaccataaccctcactattca |
36569423 |
T |
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