View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7765_low_15 (Length: 509)
Name: NF7765_low_15
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 323 - 498
Target Start/End: Original strand, 36163010 - 36163185
Alignment:
| Q |
323 |
cttttgatggatttttaaatatatcatattatgtgaaaaattagtgaataccttccacacaatttcgagggatgagttgcaatcaatgaaaagagctcca |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163010 |
cttttgatggatttttaaatatatcatattaagtgaaaaattagtgaataccttccacacaatttcgagggatgagttgcaatcaatgaaaagagctcca |
36163109 |
T |
|
| Q |
423 |
atggttgactcaacaatatcagctagatctttaggcacacctatgtgcccatttgaatgtataggatattcttcga |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36163110 |
atggttgactcaacaatatcagctagatctttaggcacacctatgtgcccatttgaatgtataggatattcttcga |
36163185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 323 - 496
Target Start/End: Original strand, 36157912 - 36158084
Alignment:
| Q |
323 |
cttttgatggatttttaaatatatcatattatgtgaaaaattagtgaataccttccacacaatttcgagggatgagttgcaatcaatgaaaagagctcca |
422 |
Q |
| |
|
||||||||||||||| ||||||||| | || ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
36157912 |
cttttgatggatttt-aaatatatcgcaataagtgaaaaattattgagtaccttccacacaatttcgagggatgagtcacaatcaatgaagagagctcca |
36158010 |
T |
|
| Q |
423 |
atggttgactcaacaatatcagctagatctttaggcacacctatgtgcccatttgaatgtataggatattcttc |
496 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
36158011 |
atcgttgactcaaccatatcagctagatctttaggcacatgtatgtgcccatttgaatgtataggataatcttc |
36158084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 36162858 - 36162953
Alignment:
| Q |
168 |
gtattggtactaatttatatgagctcaaaatcacttctaagacaatgcgtagaagatatttgaaacaatcacgttttacttatagatgagatggtgtc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36162858 |
gtattggtactaatttatatgagctcaaaatcacttctaagacaatgcgtagaagatatttgaaacaatcacgttttacttat--atgagatggtgtc |
36162953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 36162726 - 36162795
Alignment:
| Q |
20 |
gatgcatctcgaaagcgtctggctcaattataggtttaagtagttttctgaaaatctgtccaaaaaattg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
36162726 |
gatgcatctcgaaagcgtctggctcaattataggttcaagtagttttctgaaaatctgtccaaaaaattg |
36162795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 36081325 - 36081399
Alignment:
| Q |
371 |
taccttccacacaatttcgagggatgagttgcaatcaatgaaaagagctccaatggttgactcaacaatatcagc |
445 |
Q |
| |
|
||||||||||||| |||||| ||||||| ||||||| ||| | || || ||||||||||||||||||||||| |
|
|
| T |
36081325 |
taccttccacacagtttcgatggatgagccacaatcaacgaagattgcaccgatggttgactcaacaatatcagc |
36081399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 36147535 - 36147584
Alignment:
| Q |
205 |
taagacaatgcgtagaagatatttgaaacaatcacgttttacttatagat |
254 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||| | ||||||||||||||| |
|
|
| T |
36147535 |
taagataatacgtagaagatatttaaaacaataatgttttacttatagat |
36147584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University