View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_17 (Length: 447)
Name: NF7765_low_17
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 29189747 - 29190165
Alignment:
| Q |
19 |
gagtcttggtttgcagctgatacatcaagtggatatcttgaagatgcaatcaatggctgggatatttggtgcaagcaacataacttaccaacctactctc |
118 |
Q |
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| T |
29189747 |
gagtcttggtttgcagctgatacatctagtggatatcttgaagatgcaatcaatggctgggatatttggtgcaagcaacataacttaccaacctactctc |
29189846 |
T |
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| Q |
119 |
aagattcaaaggttaaactaacaactatgcatggtttcatgttctatacatttgcttaattgttatttcatagttttatttgtcaattatgttgaaactt |
218 |
Q |
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| T |
29189847 |
aagatcaaaaggttaaactaacaactatgcttggtttcatgttctatacatttgcttaattgttatttcatagttttatttgtcaattatgttgaaactt |
29189946 |
T |
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| Q |
219 |
tataagatatattaattattaacaaaaagccaatgtttggttgatcaggaacctctatttccaacattttcttccaaagcagcccaattacttcaaggta |
318 |
Q |
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| T |
29189947 |
tataagatatattaattattaacaaaaagccaatgtttggttgatcaggaacctctatttccaacattttcttccaaagcagcccaattacttcaaggta |
29190046 |
T |
|
| Q |
319 |
tgtatatatatccttgtggaatgtggttgcatcactttcaatcatgtattactagatttggaaaatcaatcatttgaaaataattttggttatttatcta |
418 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29190047 |
tgtatatatacccttgtggaatgtggttgcatcactttcaatcatgtattactagatttggaaaatcaatcatttgaaaataattttggttatttatcta |
29190146 |
T |
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| Q |
419 |
gcccaatttatcttctctg |
437 |
Q |
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| T |
29190147 |
gtccaatttatcatctctg |
29190165 |
T |
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