View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_low_18 (Length: 447)

Name: NF7765_low_18
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_low_18
NF7765_low_18
[»] chr1 (4 HSPs)
chr1 (19-432)||(50380598-50381009)
chr1 (136-189)||(26232409-26232462)
chr1 (143-191)||(25297779-25297827)
chr1 (143-191)||(45010756-45010804)
[»] chr7 (2 HSPs)
chr7 (139-191)||(26526293-26526345)
chr7 (136-168)||(36803671-36803703)
[»] chr5 (4 HSPs)
chr5 (143-191)||(24652875-24652923)
chr5 (139-187)||(636596-636644)
chr5 (139-191)||(14495826-14495878)
chr5 (143-191)||(22737089-22737137)
[»] chr3 (2 HSPs)
chr3 (143-187)||(8390644-8390688)
chr3 (136-168)||(11476350-11476382)
[»] chr8 (1 HSPs)
chr8 (368-413)||(45521043-45521088)
[»] chr4 (1 HSPs)
chr4 (143-188)||(11418227-11418272)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 19 - 432
Target Start/End: Complemental strand, 50381009 - 50380598
Alignment:
Q  19 aatggttggatctctttcttttcaaggtatgattgttttggctcagtcattgttgtctagcatgcttggatatgtaatacaaacatcagaaattcctatt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |||||||||||||||||||||    
T  50381009 aatggttagatctctttcttttcaaggtatgattgttttggctcagtcatcgatgtctagcatgcctggatatgtaatgcaaacatcagaaattcctatt 50380910  T
Q  119 caatttgtgatgaggagaatccatttggattggtctagtg-------gtattgacttaagatttggaagtgtgctcctccacgaagcaaaacaagagtgt 211  Q
    ||||||||||||||||||| |||||||| ||| | |||||       |||||| ||| ||| |||| ||||||||||||| ||||| |||  ||||||||    
T  50380909 caatttgtgatgaggagaacccatttgggttgatttagtgactgatagtattggcttgagacttgggagtgtgctcctcctcgaagtaaagtaagagtgt 50380810  T
Q  212 attgttcaaactcgtacaaattggtttctctcccctttgcccttaccgacacaaaagtttagatgaaatgcgaactgaaagagtcttacgaagaggggga 311  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||         ||||||||| ||    
T  50380809 attgatcaaactcgtacaaattggtttctctcccctttgcccttaccgacacaaaagtttagatgaaatgtgaaatgaa---------cgaagagggaga 50380719  T
Q  312 agaccaatgtatagatgatgtcatttaatctaagacgtccatcatatgatgaactatgcctaaatttattataaatgttagcaattatataaaacttgca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50380718 agaccaatgtatagatgatgtcatttaatctaagacgtccatcatatgatgaactatgcctaaatttattataaatgttagcaattatataaaacttgca 50380619  T
Q  412 ttggagcgttttgttatttgt 432  Q
    ||||||||||||||| |||||    
T  50380618 ttggagcgttttgttctttgt 50380598  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 26232462 - 26232409
Alignment:
Q  136 aatccatttggattggtctagtggtattgacttaagatttggaagtgtgctcct 189  Q
    |||||| |||| ||||||||||||||||| ||| |||| ||| |||||||||||    
T  26232462 aatccacttgggttggtctagtggtattggcttgagatctgggagtgtgctcct 26232409  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 25297779 - 25297827
Alignment:
Q  143 ttggattggtctagtggtattgacttaagatttggaagtgtgctcctcc 191  Q
    |||| |||||||||||||||||||||| ||| ||  |||||||||||||    
T  25297779 ttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcc 25297827  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 45010804 - 45010756
Alignment:
Q  143 ttggattggtctagtggtattgacttaagatttggaagtgtgctcctcc 191  Q
    |||||||||||||||| ||||||||| | || | |||||||||||||||    
T  45010804 ttggattggtctagtgttattgacttgaaatgttgaagtgtgctcctcc 45010756  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 26526293 - 26526345
Alignment:
Q  139 ccatttggattggtctagtggtattgacttaagatttggaagtgtgctcctcc 191  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||||||    
T  26526293 ccatttggattggtctggtggtattgacttaggatttgagagtgtgctcctcc 26526345  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 36803703 - 36803671
Alignment:
Q  136 aatccatttggattggtctagtggtattgactt 168  Q
    ||||||||||| |||||||||||||||||||||    
T  36803703 aatccatttgggttggtctagtggtattgactt 36803671  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 24652875 - 24652923
Alignment:
Q  143 ttggattggtctagtggtattgacttaagatttggaagtgtgctcctcc 191  Q
    |||||||||||| ||||||||||||| |||||||| |||||| ||||||    
T  24652875 ttggattggtctggtggtattgacttgagatttgggagtgtgttcctcc 24652923  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 636644 - 636596
Alignment:
Q  139 ccatttggattggtctagtggtattgacttaagatttggaagtgtgctc 187  Q
    |||||||||||||| |  |||||||||||| |||| |||||||||||||    
T  636644 ccatttggattggtatgatggtattgacttgagatctggaagtgtgctc 636596  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 14495878 - 14495826
Alignment:
Q  139 ccatttggattggtctagtggtattgacttaagatttggaagtgtgctcctcc 191  Q
    |||||||| ||||||| |||||||||||||  ||| ||| |||||||||||||    
T  14495878 ccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcc 14495826  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 22737089 - 22737137
Alignment:
Q  143 ttggattggtctagtggtattgacttaagatttggaagtgtgctcctcc 191  Q
    |||| ||||||||||||||||| |||  || ||||||||||||||||||    
T  22737089 ttgggttggtctagtggtattggcttgggacttggaagtgtgctcctcc 22737137  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 8390644 - 8390688
Alignment:
Q  143 ttggattggtctagtggtattgacttaagatttggaagtgtgctc 187  Q
    |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  8390644 ttggattggtctagtggtattgccttgagacttggaagtgtgctc 8390688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 11476350 - 11476382
Alignment:
Q  136 aatccatttggattggtctagtggtattgactt 168  Q
    ||||||||||| |||||||||||||||||||||    
T  11476350 aatccatttgggttggtctagtggtattgactt 11476382  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 45521043 - 45521088
Alignment:
Q  368 tgcctaaatttattataaatgttagcaattatataaaacttgcatt 413  Q
    ||||||||||| ||||||||| | |||| |||||||||||||||||    
T  45521043 tgcctaaatttcttataaatgatggcaactatataaaacttgcatt 45521088  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 11418227 - 11418272
Alignment:
Q  143 ttggattggtctagtggtattgacttaagatttggaagtgtgctcc 188  Q
    |||| ||||||||||| |||||||||  ||||||||||||||||||    
T  11418227 ttgggttggtctagtgatattgacttgggatttggaagtgtgctcc 11418272  T

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