View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7765_low_2 (Length: 806)
Name: NF7765_low_2
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 720; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 18 - 799
Target Start/End: Original strand, 44631018 - 44631793
Alignment:
| Q |
18 |
accagttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtgttcg |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631018 |
accagttaaacaagatatcctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtgttcg |
44631117 |
T |
|
| Q |
118 |
atatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgtatataaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44631118 |
atatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctatatgtggcttgtatataaa |
44631217 |
T |
|
| Q |
218 |
tgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgtgctgatgtgattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631218 |
tgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgtgctgatgtgattt |
44631317 |
T |
|
| Q |
318 |
caaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatttgaagag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631318 |
caaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatttgaagag |
44631417 |
T |
|
| Q |
418 |
gtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaatgtgaga |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631418 |
gtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaatgtgaga |
44631517 |
T |
|
| Q |
518 |
ccaagacaaagg-tttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacatatatactttcgc |
616 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631518 |
ccaagacaaaggttttgttactgtctcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacatatatactttcgc |
44631617 |
T |
|
| Q |
617 |
tctggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttca |
716 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631618 |
tctggctaggattttattttcattttt---attaggtgtcatcctggtgctatgttattttgatttctatatgttttcttaactatggttatctctttca |
44631714 |
T |
|
| Q |
717 |
ctatgaattggtatcaggctactttcaatacttcatatttatgcataacatgacactctgtacatttctcatatattcttcga |
799 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
44631715 |
ct----attggtatcaggctactttcaatacttcatatttatgcataacatgacactatgtacatttctcatatatttttcga |
44631793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 26 - 577
Target Start/End: Complemental strand, 44637819 - 44637261
Alignment:
| Q |
26 |
aacaagaaatcctatagtagaggtttctaggatttgtattggcatg-aaatatcgatctttctgttgttgaggactatgtcgtgacgtg-ttcgatatac |
123 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||| ||||||| ||| || | | | || ||| |||||||||||| ||| | | |||||||| |
|
|
| T |
44637819 |
aacaataaatactatagtagaggtttctaggatttgtactggcatgtaaacatggcacct-ctcctgtcgaggactatgtcatgatggggttcgatatgt |
44637721 |
T |
|
| Q |
124 |
ttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgtatataaatgtttg |
223 |
Q |
| |
|
||||| |||||||| ||| | | || ||||||||||||||||||||||| ||| |||| |||||||||||| || || || ||| ||||| | |||||| |
|
|
| T |
44637720 |
ttttattgtttattataccattggaatgtgtccaagaattggaggttacaaggattccatgaagacttctgtctatacgtagctcgtataccagtgtttg |
44637621 |
T |
|
| Q |
224 |
gtcgaaatcgtttgaatttcttgcat-------------gatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgtgctgat |
310 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||||||||| |||| |||||||||| ||| ||| ||||||||||||| |
|
|
| T |
44637620 |
gtcgaaatcatttgaatttcttgcattccaatctagcatgatgtaattctcatcctcatactttgtatc---tatattg--------atgatgtgctgat |
44637532 |
T |
|
| Q |
311 |
gtgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatt |
410 |
Q |
| |
|
|| ||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
44637531 |
gtattttgaaatgttgcagttaaaagaaaatggggaatcttttgtgttgtgtgcaagttgatcaatctacagtggctatgaaagagggttttggaaaatt |
44637432 |
T |
|
| Q |
411 |
tgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
44637431 |
tgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcggctacagcaattggatataaaa |
44637332 |
T |
|
| Q |
511 |
tgtgagaccaagacaaag----gtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattcc |
577 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||| |||| ||| ||||||||| |||||||| |
|
|
| T |
44637331 |
tgtgagaccaagacaaaggttcgtttgttactgtctaaaacttcaatttaacgaaatcttcacgtcattcc |
44637261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 21 - 783
Target Start/End: Original strand, 44681524 - 44682255
Alignment:
| Q |
21 |
agttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatgaaatatc-gatctttctgttgttgaggactatgtcgtgacgtgtt-cga |
118 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||| ||||||||||||| || ||| | ||| ||||||||||||||| ||||| |||| ||| |
|
|
| T |
44681524 |
agttaaacaagaaaatctatagcagaggtttctgagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgatatgtttcga |
44681623 |
T |
|
| Q |
119 |
tatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctg-------tatgtggcttgta |
211 |
Q |
| |
|
|||| || || ||||| |||||| | | ||||| | ||| ||||||||||| ||| || | ||||| |||||| || ||||||||| | |
|
|
| T |
44681624 |
tatatttgtactgtttgttttaccattgctatgtgttcgagagttggaggttactaggattgcatgaagtcttctgtctaatgtctatatgtggctgctt |
44681723 |
T |
|
| Q |
212 |
tataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgtgctgatg |
311 |
Q |
| |
|
|| || ||||| ||| ||| |||||| ||||||||||||| ||||||||| |||| | ||||||| |||||| ||||||||||||||| |
|
|
| T |
44681724 |
tagaagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttgtattctgtat----------tgatgatgtgctgata |
44681813 |
T |
|
| Q |
312 |
tgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaattt |
411 |
Q |
| |
|
| |||||| ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
44681814 |
tattttcaagcattgcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaagaaggttttggaaaattt |
44681913 |
T |
|
| Q |
412 |
gaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaat |
511 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || | |
|
|
| T |
44681914 |
gaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcgggtacaacaattggatatcaagt |
44682013 |
T |
|
| Q |
512 |
gtgagaccaagacaaaggtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacatatatact |
611 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
44682014 |
gtgagacaaagacaaaggtttgttactgtctcaaacatcaattaaaccaaatcttcatgtcattcc--atgctta--------tcaataacataaatact |
44682103 |
T |
|
| Q |
612 |
ttcgctctggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctc |
711 |
Q |
| |
|
||| | |||||||||||| || |||| |||||||||||| |||||||| |||||| ||| | ||||||||||| |||||||||||| |
|
|
| T |
44682104 |
ttctttttggctaggatttgttt-------------ttagttgtcatcctggtactatgttaatttgatttctttgtgttttcttaaatatggttatctc |
44682190 |
T |
|
| Q |
712 |
tttcactatgaattggtatcaggctactttcaatacttcatatttatgcataacatgacactctgtacattt |
783 |
Q |
| |
|
||| |||| ||||||||| ||||||| |||||||||| ||||||||||| |||||| ||| ||||| |
|
|
| T |
44682191 |
tttaacta-------gtatcaggccactttcactacttcatatgtatgcataacaagacactttgtgcattt |
44682255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 295 - 758
Target Start/End: Original strand, 44652783 - 44653216
Alignment:
| Q |
295 |
ttgatgatgtgctgatgtgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagag |
394 |
Q |
| |
|
|||||||||||||||| | ||| || ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||| |||||||||| || |
|
|
| T |
44652783 |
ttgatgatgtgctgatatattttgaagcattgcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaag |
44652882 |
T |
|
| Q |
395 |
aaggttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctaca |
494 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |||| |
|
|
| T |
44652883 |
aaggttttggaaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaaagaattgctggtcatctctctcttcgggtaca |
44652982 |
T |
|
| Q |
495 |
acaattggatataaaatgtgagaccaagacaaaggtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataag |
594 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| || |||||| | |||| |||||| | ||||||||||||| |||| ||| |
|
|
| T |
44652983 |
acaattggatatcaaatgtgagaccaagacaaaggttcgttacggtctcaaacatcaattaaaccaagtgttcatgtcattcc--atgcttac------- |
44653073 |
T |
|
| Q |
595 |
tcaataacatatatactttcgctctggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttc |
694 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||| || |||| ||||||||||||||||||||| |||||| || | ||||||| |
|
|
| T |
44653074 |
-caataacataaatactttctttttggctaggatttgttt-------------ttagttgtcatcctggtgctatgttaatttgattcctttgtgttttc |
44653159 |
T |
|
| Q |
695 |
ttaactatggttatctctttcactatgaattggtatcaggctactttcaatacttcatatttat |
758 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
44653160 |
ttaaatatggttatctcttttacta-------gtatcaggccactttcaatacttcataattat |
44653216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 326 - 715
Target Start/End: Original strand, 44691502 - 44691876
Alignment:
| Q |
326 |
gcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatttgaagaggtgcttca |
425 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
44691502 |
gcagtgaaaagaaaatggggaatattgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
44691601 |
T |
|
| Q |
426 |
gccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaatgtgagaccaagaca |
525 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
44691602 |
tccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcgggttcaacaattggatatcaaatgtgagaccaagaca |
44691701 |
T |
|
| Q |
526 |
aa----ggtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacat--atatactttcgctct |
619 |
Q |
| |
|
|| ||||||||||| | | |||||| |||| |||||||||||||| |||||| |||| || ||||| |||| |||||||||| || | |
|
|
| T |
44691702 |
aaggctggtttgttactttctaaaacttcaattataccaaatcttcatgccattcc--atgctta--------tcaatcacatggatatactttctcttt |
44691791 |
T |
|
| Q |
620 |
ggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttc |
715 |
Q |
| |
|
||| |||| | |||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
44691792 |
ggccagga--------taattttt---attaggtatcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
44691876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 44652524 - 44652629
Alignment:
| Q |
37 |
ctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtg-ttcgatatacttttagtgttta |
135 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||| | ||| | ||| ||||||||||||||||||||| || ||||||||| || || ||||| |
|
|
| T |
44652524 |
ctatagcagaggtttctaacatttttattggcatgaaaatttgatttctctcttgttgaggactatgtcgtgatatgtttcgatatatttgtactgtttg |
44652623 |
T |
|
| Q |
136 |
ttttac |
141 |
Q |
| |
|
|||||| |
|
|
| T |
44652624 |
ttttac |
44652629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 202 - 236
Target Start/End: Original strand, 44691419 - 44691453
Alignment:
| Q |
202 |
gtggcttgtatataaatgtttggtcgaaatcgttt |
236 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
44691419 |
gtggcttgtatataaatgtttggtagaaatcgttt |
44691453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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