View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_low_20 (Length: 413)

Name: NF7765_low_20
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_low_20
NF7765_low_20
[»] chr3 (6 HSPs)
chr3 (1-247)||(39907551-39907799)
chr3 (172-398)||(39907779-39908006)
chr3 (4-54)||(32421637-32421685)
chr3 (1-54)||(3281721-3281772)
chr3 (1-57)||(24645368-24645422)
chr3 (1-29)||(33374530-33374558)
[»] chr8 (5 HSPs)
chr8 (1-61)||(28646679-28646737)
chr8 (1-61)||(28651263-28651321)
chr8 (1-63)||(42569734-42569794)
chr8 (1-54)||(35356173-35356224)
chr8 (1-60)||(6968238-6968295)
[»] chr7 (4 HSPs)
chr7 (1-54)||(47078256-47078307)
chr7 (1-54)||(3293144-3293195)
chr7 (1-54)||(3937127-3937178)
chr7 (1-54)||(33224838-33224889)
[»] chr4 (5 HSPs)
chr4 (1-54)||(4949521-4949572)
chr4 (1-59)||(17683234-17683290)
chr4 (1-54)||(39312621-39312672)
chr4 (1-54)||(52846232-52846283)
chr4 (1-50)||(55601706-55601753)
[»] chr2 (2 HSPs)
chr2 (1-54)||(15141476-15141527)
chr2 (1-54)||(42372494-42372545)
[»] chr1 (6 HSPs)
chr1 (1-54)||(18336161-18336212)
chr1 (1-54)||(19969567-19969618)
chr1 (1-54)||(44632543-44632594)
chr1 (1-54)||(50781575-50781626)
chr1 (1-29)||(3558884-3558912)
chr1 (1-56)||(4509475-4509528)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39907551 - 39907799
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttcaatattaaaaaccaacaaatcgtacacaaacagtatacacgtt 100  Q
    |||||||||||||||| |||||||||||   ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||| ||||||||||    
T  39907551 atgtgagtatgagagaaaaagttatcatt--aaataaatgttcaaatatcatttctcaatattaaaaaccaataaatcatatacaaacaatatacacgtt 39907648  T
Q  101 gttggttgtcaactttattgttcaaaaatcactca---tgtttaaaagcaattgaaatgtagcatacaagttactcattgcaatttgactatagtct-nn 196  Q
    |||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  39907649 gttggttgtcaactttattgttcaaaaatcactcatgttgttgaaaagcaattgaaatgtagcatacaagttactcattgcaatttgactatagtctaaa 39907748  T
Q  197 nnnnncatgaaaaattagtataccaactactcattgcaatttgactctagt 247  Q
         |||||||||||||||||||||||| |||||||||||||||| ||||    
T  39907749 aaaaacatgaaaaattagtataccaactattcattgcaatttgactatagt 39907799  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 172 - 398
Target Start/End: Original strand, 39907779 - 39908006
Alignment:
Q  172 tcattgcaatttgactatagtctnnnnnnn-catgaaaaattagtataccaactactcattgcaatttgactctagtttnnnnnnncatgagcaatttat 270  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||||||||||||||       ||||||||||||||    
T  39907779 tcattgcaatttgactatagtctaaaaaaaacatgaaaaattagtataccaactattcattgcaatttgactctagtttaaaaaaacatgagcaatttat 39907878  T
Q  271 tattgtttcataactatgaagcacgtacacttctaagattcggtgcatcgtggtatccggtatgcatcagtgtcggccactcagaggacactagtatatg 370  Q
     ||||||||||||||||||||||| |||||||||||||||||  ||||| |||||||||||| |||||  ||||||||||  ||||||||||||||||||    
T  39907879 cattgtttcataactatgaagcacatacacttctaagattcgacgcatcatggtatccggtacgcatcgatgtcggccaccaagaggacactagtatatg 39907978  T
Q  371 gccaattcctctatcaaaagtctaaaat 398  Q
     |||||||||||||||||||||||||||    
T  39907979 accaattcctctatcaaaagtctaaaat 39908006  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 32421637 - 32421685
Alignment:
Q  4 tgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||  || |||||| |||||||||||||||||    
T  32421637 tgagtatgagagagaaagttat--tatcaaatagatgttcaaatatcattt 32421685  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3281721 - 3281772
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    |||||||||| |||||||||||| ||| |  |||||||||||||||||||||||    
T  3281721 atgtgagtataagagagaaagttgtcaca--aaataaatgttcaaatatcattt 3281772  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24645422 - 24645368
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttc 57  Q
    |||||||||||||||| |||||| |||||  ||||  ||||||||||||||||||||    
T  24645422 atgtgagtatgagagaaaaagttgtcata--aaatggatgttcaaatatcatttttc 24645368  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33374558 - 33374530
Alignment:
Q  1 atgtgagtatgagagagaaagttatcata 29  Q
    |||||||||||||||||||||||||||||    
T  33374558 atgtgagtatgagagagaaagttatcata 33374530  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28646737 - 28646679
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttcaata 61  Q
    ||||||||||||||||||||||| ||||  |||||| ||||||||||||||||| ||||||    
T  28646737 atgtgagtatgagagagaaagttgtcat--caaatagatgttcaaatatcatttatcaata 28646679  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 28651321 - 28651263
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttcaata 61  Q
    ||||||||||||||||||||||| ||||  |||||| ||||||||||||||||| ||||||    
T  28651321 atgtgagtatgagagagaaagttgtcat--caaatagatgttcaaatatcatttatcaata 28651263  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42569734 - 42569794
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttcaatatt 63  Q
    |||||| |||||||||||||||| |||||  |||| |||||||||||||||||| || |||||    
T  42569734 atgtgaatatgagagagaaagttgtcata--aaatgaatgttcaaatatcatttctctatatt 42569794  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35356173 - 35356224
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||| ||||||||||||||||||||  || |||| ||||||||||||||||||    
T  35356173 atgtgggtatgagagagaaagttatc--acaaaatgaatgttcaaatatcattt 35356224  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6968238 - 6968295
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttcaat 60  Q
    ||||||||||||||||||||||| ||  |||| ||  ||||||||||||||||| |||||    
T  6968238 atgtgagtatgagagagaaagttgtc--accagattgatgttcaaatatcatttctcaat 6968295  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47078256 - 47078307
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| |||||  ||||| |||||||||||||||||    
T  47078256 atgtgagtatgagagagaaagttgtcata--aaatagatgttcaaatatcattt 47078307  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3293195 - 3293144
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    |||||| |||||||||||||||| |||  |||||| ||||||||||||||||||    
T  3293195 atgtgaatatgagagagaaagttgtca--ccaaatgaatgttcaaatatcattt 3293144  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3937127 - 3937178
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  || ||||| |||||||||||||||||    
T  3937127 atgtgagtatgagagagaaagttgtc--acaaaatagatgttcaaatatcattt 3937178  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33224889 - 33224838
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  || ||||| |||||||||||||||||    
T  33224889 atgtgagtatgagagagaaagttgtc--acaaaatagatgttcaaatatcattt 33224838  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4949572 - 4949521
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  ||||||| ||||||||||||||||||    
T  4949572 atgtgagtatgagagagaaagttgtc--accaaatgaatgttcaaatatcattt 4949521  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 17683290 - 17683234
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcatttttcaa 59  Q
    |||||||||| |||||||||||| |||||  |||| |||||||||||||||||| ||||    
T  17683290 atgtgagtataagagagaaagttgtcata--aaatgaatgttcaaatatcatttctcaa 17683234  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39312621 - 39312672
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  || ||||| |||||||||||||||||    
T  39312621 atgtgagtatgagagagaaagttgtc--actaaatagatgttcaaatatcattt 39312672  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52846232 - 52846283
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| |||||  ||||| ||||| |||||||||||    
T  52846232 atgtgagtatgagagagaaagttgtcata--aaatagatgtttaaatatcattt 52846283  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 55601706 - 55601753
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatc 50  Q
    ||||||||||||||||||||||| |||||  ||||| |||||||||||||    
T  55601706 atgtgagtatgagagagaaagttgtcata--aaatagatgttcaaatatc 55601753  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15141527 - 15141476
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| |||||  ||||| |||| ||||||||||||    
T  15141527 atgtgagtatgagagagaaagttgtcata--aaatagatgtacaaatatcattt 15141476  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 42372545 - 42372494
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  || ||||| |||||||||||||||||    
T  42372545 atgtgagtatgagagagaaagttgtc--actaaatagatgttcaaatatcattt 42372494  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18336212 - 18336161
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  || |||| ||||||||||||||||||    
T  18336212 atgtgagtatgagagagaaagttgtc--acaaaatgaatgttcaaatatcattt 18336161  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19969567 - 19969618
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| |||||  ||||  |||||||||||||||||    
T  19969567 atgtgagtatgagagagaaagttgtcata--aaatggatgttcaaatatcattt 19969618  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44632594 - 44632543
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| ||  |||||||  |||||||||||||||||    
T  44632594 atgtgagtatgagagagaaagttgtc--accaaatggatgttcaaatatcattt 44632543  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 50781575 - 50781626
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattt 54  Q
    ||||||||||||||||||||||| |||||  ||||  |||||||||||||||||    
T  50781575 atgtgagtatgagagagaaagttgtcata--aaatggatgttcaaatatcattt 50781626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3558912 - 3558884
Alignment:
Q  1 atgtgagtatgagagagaaagttatcata 29  Q
    |||||||||||||||||||||||||||||    
T  3558912 atgtgagtatgagagagaaagttatcata 3558884  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4509475 - 4509528
Alignment:
Q  1 atgtgagtatgagagagaaagttatcataccaaataaatgttcaaatatcattttt 56  Q
    |||||||||||||||| ||| ||||||||  ||||| ||||| |||||||||||||    
T  4509475 atgtgagtatgagagataaaattatcata--aaatagatgttaaaatatcattttt 4509528  T

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