View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_25 (Length: 360)
Name: NF7765_low_25
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 15729406 - 15729070
Alignment:
| Q |
16 |
caaaccaaagacacaaatatgcctctataaatgtcagcaccctaacaactacgagaaataatgcaaagaactcttccttattctctcacttgcaaagaac |
115 |
Q |
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| T |
15729406 |
caaaccaaagacacaaatatgcctctataaatgtcagcaccctaacaactacgagaaataatgcaaagaactcttccttattctctcacttgcaaagaac |
15729307 |
T |
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| Q |
116 |
tcttccttaatatcacaagtatccctatacaattcatccaatgttgttgaactattcctttatctcacttcctagtttcttcaaatctcaagaactagga |
215 |
Q |
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| T |
15729306 |
tcttcctttatatcacaagtatccctatacaattcatccaatgttgttgaactcttcctttatctcacttcctagtttcttcaaatctcaagaactagga |
15729207 |
T |
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| Q |
216 |
agaactaatcttctcattcatagaaatagttctccacttctatgttacgctaccaatacaaatgtttctcaaagaaaatcagccaattatcaacccaata |
315 |
Q |
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| T |
15729206 |
agaactaatcttctcattcatagaaatggttctccacttctatgttacgctaccaatacaaatgtttctcaaagaaaatcagccaattaccaacccaata |
15729107 |
T |
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| Q |
316 |
tttggaattacgatatcttacaatccttgaaacacga |
352 |
Q |
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| T |
15729106 |
tttggaattacgatatcttacaatccttgaaacacga |
15729070 |
T |
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