View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_27 (Length: 334)
Name: NF7765_low_27
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 12945417 - 12945185
Alignment:
| Q |
31 |
gttgcttaagaatgctctcttcacagtagcacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctcta |
130 |
Q |
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| T |
12945417 |
gttgcttaagaatgctctcttcacagtagcacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctcca |
12945318 |
T |
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| Q |
131 |
aacaaatttgtcgagacaatgatatcaaaactctgggtacaactcacggtaatatttccaagaccctataacattttcttacaagactgttattattttt |
230 |
Q |
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| T |
12945317 |
gacaaatttgtcgagacaatgatatcaaaactcagagtacaactcacggtaattttgccaa-accctataacattttctatcaagactattgttattttt |
12945219 |
T |
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| Q |
231 |
taacattttcatacctgaagttttaaaaagctca |
264 |
Q |
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| T |
12945218 |
taaaattttcatacttgaagttttaaaaaactca |
12945185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 12940201 - 12940135
Alignment:
| Q |
32 |
ttgcttaagaatgctctcttcacagtagcacttggctcaaatgatttccttgataactatttagcac |
98 |
Q |
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|||||||||||| ||||||| ||||||||| |||||||||| ||||| |||||||||||||| |||| |
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| T |
12940201 |
ttgcttaagaattctctctttacagtagcatttggctcaaacgattttcttgataactatttggcac |
12940135 |
T |
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