View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_low_28 (Length: 318)

Name: NF7765_low_28
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_low_28
NF7765_low_28
[»] scaffold0667 (1 HSPs)
scaffold0667 (18-316)||(4739-5037)
[»] chr2 (19 HSPs)
chr2 (19-255)||(9283827-9284063)
chr2 (40-241)||(9321254-9321455)
chr2 (19-316)||(8573075-8573372)
chr2 (19-255)||(9060772-9061008)
chr2 (48-122)||(9065362-9065436)
chr2 (48-255)||(9316314-9316521)
chr2 (40-151)||(9328874-9328985)
chr2 (53-255)||(9292222-9292421)
chr2 (53-256)||(10372161-10372364)
chr2 (18-164)||(12012274-12012420)
chr2 (53-256)||(10353412-10353615)
chr2 (18-256)||(10348047-10348285)
chr2 (48-160)||(9274801-9274913)
chr2 (40-258)||(10336119-10336340)
chr2 (110-255)||(7115276-7115421)
chr2 (191-255)||(9357612-9357676)
chr2 (18-77)||(12005933-12005992)
chr2 (187-256)||(9329024-9329093)
chr2 (89-151)||(8579228-8579290)
[»] chr1 (6 HSPs)
chr1 (18-249)||(29467433-29467663)
chr1 (40-160)||(29423546-29423666)
chr1 (48-249)||(29442970-29443174)
chr1 (40-164)||(29453041-29453165)
chr1 (196-242)||(29423702-29423748)
chr1 (192-249)||(29452956-29453013)
[»] chr3 (1 HSPs)
chr3 (92-256)||(37462828-37462992)
[»] chr4 (1 HSPs)
chr4 (53-256)||(26575164-26575367)
[»] chr8 (1 HSPs)
chr8 (40-241)||(41966374-41966575)


Alignment Details
Target: scaffold0667 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 4739 - 5037
Alignment:
Q  18 aacccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaatta 117  Q
    ||||||||| |||||||  || ||||||| |||| ||||| |||||| |||||||||||| | | | || ||  ||| ||||| ||||||||||||||||    
T  4739 aacccatcaagtttctttgccattatccagtgaatagaatcctcaaccaaaacccccatggtttgagcaaagacaagggcgtacggcatagtaggaatta 4838  T
Q  118 ttttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatc 217  Q
    ||||||| ||||| |||||  |||| ||||||||| |||||| |||||||||| |||||||   ||||||||||||||||| ||||||||  ||||||||    
T  4839 ttttccacgagttggttttcaagctaaagagtctaacatgtggatcataaaaagggttttgtagagagactaaccaagagagtctgaggattttgtaatc 4938  T
Q  218 accggttaatggatcaaaaccgaagtcgtgaaagcataaagagtagctagtgtcaaatggagaacgacgagtaataggaagagagagaaaagggataat 316  Q
     |||||||| ||||||||||||||| |||||| |||||| ||| || |  ||||  ||||||||||| |||||||||| |||| |||||||||||||||    
T  4939 gccggttaaaggatcaaaaccgaagccgtgaacgcataaggagcagttcatgtcggatggagaacgaggagtaataggtagagggagaaaagggataat 5037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 9284063 - 9283827
Alignment:
Q  19 acccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattat 118  Q
    |||||||| | |||||  || ||||||| |||| |||||||||||||||||||||||||   | | ||||||||| || |||||||||| ||||||||||    
T  9284063 acccatcaagattcttttccattatccagtgaatagaattctcaacaaaaacccccatggcttgagcatagtaaacagtgtagggcataataggaattat 9283964  T
Q  119 tttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatca 218  Q
    |||||| |||||||||||||||||||||||||| |||||||||| |||||||  ||||||   ||| |||| ||||||||||| |||||| ||||||||     
T  9283963 tttccacgagtttgttttggagctgaagagtctggcatgtgaatgataaaaagagttttgtagagatactagccaagagattcggaggagtttgtaatcg 9283864  T
Q  219 ccggttaatggatcaaaaccgaagtcgtgaaagcata 255  Q
    |||||||| ||||||||||||||| |||||| |||||    
T  9283863 ccggttaaaggatcaaaaccgaagccgtgaatgcata 9283827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 9321254 - 9321455
Alignment:
Q  40 ttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttgga 139  Q
    ||||||| ||||||||||||||||||||||||||||||   | | |||||  ||||| ||| |||||| | |||||||||||||| ||||||||| | ||    
T  9321254 ttatccagtgaagagaattctcaacaaaaacccccatgaattgagcatagataagagagtacggcatactgggaattattttccacgagtttgttataga 9321353  T
Q  140 gctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccg 239  Q
    ||||||||||||  |||||||||||||||||  ||| ||   |||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  9321354 gctgaagagtctgacatgtgaatcataaaaagagttgtgtggagaggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccg 9321453  T
Q  240 aa 241  Q
    ||    
T  9321454 aa 9321455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 8573372 - 8573075
Alignment:
Q  19 acccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattat 118  Q
    |||||||| |||||||  || | | ||| ||||||||||||| ||||||||||||||||   | |||||| | ||||||||| ||| || | |||||| |    
T  8573372 acccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtatggcgtactgggaattgt 8573273  T
Q  119 tttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatca 218  Q
    |||||| |||||||||||  |||| |||||| |  ||||||||||||||||| |||| || | || ||||||||||||||||| |||||| ||||||||     
T  8573272 tttccacgagtttgttttcaagctaaagagtgtgacatgtgaatcataaaaagggttatgttgagtgactaaccaagagattcggaggagtttgtaatcg 8573173  T
Q  219 ccggttaatggatcaaaaccgaagtcgtgaaagcataaagagtagctagtgtcaaatggagaacgacgagtaataggaagagagagaaaagggataat 316  Q
     |||||||| |||||||||||||| ||||||   ||||  || ||    |||||  ||||| | || ||||||||||||||| |||||||||||||||    
T  8573172 gcggttaatagatcaaaaccgaagccgtgaagatataagtagcagtacatgtcaggtggaggatgaggagtaataggaagagggagaaaagggataat 8573075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 9061008 - 9060772
Alignment:
Q  19 acccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattat 118  Q
    |||||||| |||||||  || | | ||| ||||||||||||| ||||||||||||||||   | |||||| | ||||||||| |||||| | |||||| |    
T  9061008 acccatcaagtttcttggccataacccagtgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgt 9060909  T
Q  119 tttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatca 218  Q
    |||||| |||||||||||  |||| ||||| ||  |||||||||||||||||  ||||||   ||  | |||||||| |||||||||||| ||||||||     
T  9060908 tttccacgagtttgttttcaagctaaagagactgacatgtgaatcataaaaaatgttttgtcgagcaaataaccaagtgattctgaggagtttgtaatcg 9060809  T
Q  219 ccggttaatggatcaaaaccgaagtcgtgaaagcata 255  Q
     |||| |||||||||||||||||| |||||| |||||    
T  9060808 gcggtgaatggatcaaaaccgaagccgtgaacgcata 9060772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 9065436 - 9065362
Alignment:
Q  48 tgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttc 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9065436 tgaatagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttc 9065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 255
Target Start/End: Original strand, 9316314 - 9316521
Alignment:
Q  48 tgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaaga 147  Q
    ||||||||||||| ||||||||||||||||   | |||||| | ||||||||| |||||| | |||||| ||||||| |||||||||||  |||| ||||    
T  9316314 tgaagagaattctgaacaaaaacccccatggcttgaacatattgaagagcgtacggcatactgggaattgttttccacgagtttgttttcaagctaaaga 9316413  T
Q  148 gtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtg 247  Q
    | ||  |||||||||||||||||  |   ||| ||  | | | |||||| ||||||||||| ||||||||||| ||| ||||||||||||||||| ||||    
T  9316414 gactgacatgtgaatcataaaaagagcaatgaccatcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtg 9316513  T
Q  248 aaagcata 255  Q
    || |||||    
T  9316514 aacgcata 9316521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 151
Target Start/End: Original strand, 9328874 - 9328985
Alignment:
Q  40 ttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttgga 139  Q
    ||||||| ||||||||||||||||| ||||||||| || | | | |||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  9328874 ttatccagtgaagagaattctcaaccaaaacccccgtgttttgagcatagacaagagcgtagggcatagcaggaattattttccaagagtttgttttaga 9328973  T
Q  140 gctgaagagtct 151  Q
    | ||||||||||    
T  9328974 gttgaagagtct 9328985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 53 - 255
Target Start/End: Original strand, 9292222 - 9292421
Alignment:
Q  53 agaattctcaacaaaaacccccat-gctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtct 151  Q
    |||||||| ||||||||||||||| ||| | |||||| | ||||||||| |||||| ||||||| |||||||| ||||| ||||||||||||||||||||    
T  9292222 agaattctgaacaaaaacccccatagct-tgaacatattgaagagcgtacggcatactaggaatgattttccacgagttagttttggagctgaagagtct 9292320  T
Q  152 agcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaag 251  Q
      | |||| |||| || | |  | | | ||   | ||| |||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||| |    
T  9292321 cacctgtggatcaaaagagtaatgtaggtc---ggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacg 9292417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 256
Target Start/End: Original strand, 10372161 - 10372364
Alignment:
Q  53 agaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtcta 152  Q
    |||||| |||||||||||||||||| ||| |  ||| | |||| |||| ||||||||||||||||| ||||| ||||| | ||||||||||||||||| |    
T  10372161 agaattgtcaacaaaaacccccatggtgtgataatactgaagaacgtacggcatagtaggaattatcttccacgagttagctttggagctgaagagtcga 10372260  T
Q  153 gcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaagc 252  Q
     |||||| ||||||||||  | |||| |    || |||  |||||||||||||||| |||| ||| |||| ||| | ||||||||||||| | |||| ||    
T  10372261 acatgtggatcataaaaagtgctttggtggtcgattaagtaagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgc 10372360  T
Q  253 ataa 256  Q
    ||||    
T  10372361 ataa 10372364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 12012420 - 12012274
Alignment:
Q  18 aacccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaatta 117  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |   | ||||| ||||| | |||   ||| |||||| ||    
T  12012420 aacccatcaggattcttcaccgttatccaatgaagagaattctcaacaaaaactcccatggttagagcatagcaaagaacatagtctatactaggaagta 12012321  T
Q  118 ttttccaagagtttgttttggagctgaagagtctagcatgtgaatca 164  Q
     |||||| ||||||||||| ||| ||||||||||  ||| |||||||    
T  12012320 ctttccacgagtttgttttcgaggtgaagagtctgacatatgaatca 12012274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 256
Target Start/End: Original strand, 10353412 - 10353615
Alignment:
Q  53 agaattctcaacaaaaacccccatgctgttaa--catagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtc 150  Q
    ||||||||||||||||||||||||  ||||||  ||||||||||||  || |||| | ||||||||| |||||| |||||||||||  ||||||||||||    
T  10353412 agaattctcaacaaaaacccccat--tgttaaagcatagtaaagagaataaggcaaattaggaattactttccatgagtttgttttcaagctgaagagtc 10353509  T
Q  151 tagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaa 250  Q
    |  |||||| |||||||||| |||||||   |  ||  ||   ||||||||||||||| |||||||| |||| ||  | ||||||||||||| | ||||     
T  10353510 tgacatgtggatcataaaaagggttttgtagatcgagcaagttagagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaac 10353609  T
Q  251 gcataa 256  Q
    ||||||    
T  10353610 gcataa 10353615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 10348047 - 10348285
Alignment:
Q  18 aacccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaatta 117  Q
    ||||||||| ||||||||  | | ||||| |||| |||||||||||||||||||||||    ||  | ||  | |||| |||| ||||||| ||||||||    
T  10348047 aacccatcaagtttcttcgtcataatccagtgaatagaattctcaacaaaaacccccaaatcgtataaatgttgaagatcgtacggcatagcaggaatta 10348146  T
Q  118 ttttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatc 217  Q
    | ||||| |||||||||||  |||||||||||||  | |||| |||||||||| |||| ||   |  || |||   ||| ||||||||||| ||||||||    
T  10348147 tcttccatgagtttgttttcaagctgaagagtctcacttgtggatcataaaaagggttctgtagatcgagtaagtgagaaattctgaggagtttgtaatc 10348246  T
Q  218 accggttaatggatcaaaaccgaagtcgtgaaagcataa 256  Q
    ||||| || | |||||||||||||| |||||| ||||||    
T  10348247 accggatatttgatcaaaaccgaagccgtgaacgcataa 10348285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 9274801 - 9274913
Alignment:
Q  48 tgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaaga 147  Q
    |||||||||||||||||||||| |||||||   | |||||| | ||||||||| |||||| | |||||||||||||| |||||||||||  |||||||||    
T  9274801 tgaagagaattctcaacaaaaatccccatggcttgaacatatttaagagcgtacggcatactgggaattattttccacgagtttgttttcaagctgaaga 9274900  T
Q  148 gtctagcatgtga 160  Q
    ||||  |||||||    
T  9274901 gtctcacatgtga 9274913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 10336119 - 10336340
Alignment:
Q  40 ttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttgga 139  Q
    ||||||| ||||||||||||||||||||||| |||||| |   |  ||||||||||   || ||||||   |||| | ||||||||||||||||||| ||    
T  10336119 ttatccagtgaagagaattctcaacaaaaacacccatggttagagtatagtaaagaatatacggcatatccggaagtgttttccaagagtttgttttcga 10336218  T
Q  140 gctgaagagtctagcatgtgaatcataaaaa---tggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaa 236  Q
    |||||||||| |   |||||||| || ||||   |||| |||   |  ||| |||||||||||||||||||| ||||||||  ||| ||||| |||||||    
T  10336219 gctgaagagtgtcaaatgtgaattatcaaaagtatggtgttgtagatcgacgaaccaagagattctgaggagtttgtaatcggcggataatgaatcaaaa 10336318  T
Q  237 ccgaagtcgtgaaagcataaag 258  Q
    |||||  |||||| ||||||||    
T  10336319 ccgaatccgtgaacgcataaag 10336340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 255
Target Start/End: Complemental strand, 7115421 - 7115276
Alignment:
Q  110 aggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagc 209  Q
    |||||| |||||||| |||||||||||  | |||||||||||    |||||||||||||||  |||| |   |  |  |||||||||||||||||| ||     
T  7115421 aggaatcattttccacgagtttgttttcaaactgaagagtctgatctgtgaatcataaaaagagtttggtggattgcataaccaagagattctgagaagt 7115322  T
Q  210 ttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaagcata 255  Q
    ||||||||| | ||||| ||||||||||||||| ||||||||||||    
T  7115321 ttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcata 7115276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 9357612 - 9357676
Alignment:
Q  191 ccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaagcata 255  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||| |||||    
T  9357612 ccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 9357676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 12005992 - 12005933
Alignment:
Q  18 aacccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatg 77  Q
    ||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||    
T  12005992 aacccatcaggtttcttgaccatcatccagtgaagagaattctcaacaaaaacccccatg 12005933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 9329024 - 9329093
Alignment:
Q  187 ctaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaagcataa 256  Q
    ||| ||||| |||||||||||| ||||||||||||| ||| ||||||||||||||  |||||| ||||||    
T  9329024 ctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataa 9329093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 8579290 - 8579228
Alignment:
Q  89 gtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtct 151  Q
    |||||||||||| || ||| |||||| |  |||||| ||||||||||||||||||||||||||    
T  8579290 gtaaagagcgtacgggatattaggaagtgctttccacgagtttgttttggagctgaagagtct 8579228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 29467663 - 29467433
Alignment:
Q  18 aacccatcaggtttcttcaccgttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaatta 117  Q
    ||||||||| ||||||||  | |||||||||||||||||||||||||||||||| ||||| | | |  ||||||||||| ||| |||||| ||| || ||    
T  29467663 aacccatcaagtttcttcttcattatccaatgaagagaattctcaacaaaaaccaccatggtttgaggatagtaaagagagtacggcatactagaaagta 29467564  T
Q  118 ttttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatc 217  Q
     |||||| ||||| ||||| |||||||||||| || |||||||||||| |   ||||  ||      ||| || ||||||||||||| ||| ||||||||    
T  29467563 ctttccaggagttcgttttcgagctgaagagtgtaacatgtgaatcatgagtgtggtggtgtagtttgacgaaacaagagattctga-gagtttgtaatc 29467465  T
Q  218 accggttaatggatcaaaaccgaagtcgtgaa 249  Q
    | ||||||||||||||||||||||| ||||||    
T  29467464 atcggttaatggatcaaaaccgaagccgtgaa 29467433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 29423546 - 29423666
Alignment:
Q  40 ttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttgga 139  Q
    ||||||| |||||||||||||||||||||||||||||  | | | |||||||||||| ||| ||||| ||||||| |  |||||| ||||||||||| ||    
T  29423546 ttatccagtgaagagaattctcaacaaaaacccccattgtttgagcatagtaaagagtgtaaggcatggtaggaagttctttccacgagtttgttttcga 29423645  T
Q  140 gctgaagagtctagcatgtga 160  Q
    |||||||||||| ||||||||    
T  29423646 gctgaagagtctcgcatgtga 29423666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 249
Target Start/End: Complemental strand, 29443174 - 29442970
Alignment:
Q  48 tgaagagaattctcaacaaaaacccccat-gctgtt--aacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctga 144  Q
    ||||| ||||||||||||||| ||||||| | | ||  | ||||| |||||| ||| ||||||||||||| |  |||||| |||||||||||| ||||||    
T  29443174 tgaagggaattctcaacaaaatcccccattgttcttcgagcataggaaagagtgtaaggcatagtaggaagttctttccacgagtttgttttgaagctga 29443075  T
Q  145 agagtctagcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtc 244  Q
    |||||||| ||||||| ||| ||  |  || |||  |    || || ||||||||||||| ||| ||||||||   ||| |||||||||||||||||| |    
T  29443074 agagtctaacatgtgattcaaaagtagagtgttgtaccccaacgaagcaagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagcc 29442975  T
Q  245 gtgaa 249  Q
    |||||    
T  29442974 gtgaa 29442970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 29453165 - 29453041
Alignment:
Q  40 ttatccaatgaagagaattctcaacaaaaacccccatgctgtt--aacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttg 137  Q
    ||||||| |||||||||||||||||||||||||||   |||||  |  |||| |||||||||| |||||| ||||||    |||||| |||||  ||||     
T  29453165 ttatccagtgaagagaattctcaacaaaaaccccc--tctgttcgaggataggaaagagcgtacggcatactaggaaggtctttccacgagttcattttc 29453068  T
Q  138 gagctgaagagtctagcatgtgaatca 164  Q
    ||||||||||||||  |||||||||||    
T  29453067 gagctgaagagtctcacatgtgaatca 29453041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 29423702 - 29423748
Alignment:
Q  196 agattctgaggagcttgtaatcaccggttaatggatcaaaaccgaag 242  Q
    ||||| ||||||| ||||||||| | |||||||||||||||||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaag 29423748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 29453013 - 29452956
Alignment:
Q  192 caagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaa 249  Q
    ||||||||||||||||| ||||||||  || |||| ||||||||||| ||| ||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaa 29452956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 37462828 - 37462992
Alignment:
Q  92 aagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtctagcatgtgaatcataaaaatggttttgatcagagactaac 191  Q
    ||||| |||||| | | |||||| ||||||||| ||||||||||||||||||||||||||  |||||| |||||||||| |||||||   |  ||  | |    
T  37462828 aagagagtagggaaaactaggaactattttccacgagtttgttttggagctgaagagtctcacatgtggatcataaaaagggttttgtagatcgagaagc 37462927  T
Q  192 caagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaagcataa 256  Q
    ||||||||||||||||| |||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  37462928 caagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataa 37462992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 256
Target Start/End: Original strand, 26575164 - 26575367
Alignment:
Q  53 agaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttggagctgaagagtcta 152  Q
    |||||||||||||||||| |||||  |   |  ||||||||||||||| || | | |||||||||||||||| |||||||||||  ||||||||||||||    
T  26575164 agaattctcaacaaaaacacccattgttcgagtatagtaaagagcgtaaggaaaattaggaattattttccatgagtttgttttcaagctgaagagtcta 26575263  T
Q  153 gcatgtgaatcataaaaatggttttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaaccgaagtcgtgaaagc 252  Q
     |||||| |||||||||| |||||||   |  ||  ||  |||||||||||||||| |||||||| |||| ||| | ||||||||||||| |||||| ||    
T  26575264 acatgtggatcataaaaagggttttgtagatcgagcaagtaagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgc 26575363  T
Q  253 ataa 256  Q
    ||||    
T  26575364 ataa 26575367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 241
Target Start/End: Complemental strand, 41966575 - 41966374
Alignment:
Q  40 ttatccaatgaagagaattctcaacaaaaacccccatgctgttaacatagtaaagagcgtagggcatagtaggaattattttccaagagtttgttttgga 139  Q
    ||||||| ||||||||||| | |||||||||||||||| | | | ||||||||||||| || |||||  | |||||||||||||| |||||  |||| ||    
T  41966575 ttatccagtgaagagaattgtgaacaaaaacccccatggtttgagcatagtaaagagcatacggcattctgggaattattttccacgagttgtttttaga 41966476  T
Q  140 gctgaagagtctagcatgtgaatcataa--aaatggtt-ttgatcagagactaaccaagagattctgaggagcttgtaatcaccggttaatggatcaaaa 236  Q
    ||| || || ||  ||||||||||| ||  | |  ||| |||||||   |   ||||||||||||||||||| |||| ||| | ||||||||||||||||    
T  41966475 gctaaatagcctgacatgtgaatcaaaagtagagagttgttgatca---aaagaccaagagattctgaggagtttgtgatcgctggttaatggatcaaaa 41966379  T
Q  237 ccgaa 241  Q
    |||||    
T  41966378 ccgaa 41966374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University