View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_low_3 (Length: 751)

Name: NF7765_low_3
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_low_3
NF7765_low_3
[»] chr2 (9 HSPs)
chr2 (16-567)||(43797039-43797575)
chr2 (567-741)||(43796801-43796975)
chr2 (570-632)||(12238527-12238589)
chr2 (255-353)||(43798345-43798447)
chr2 (591-632)||(17317159-17317200)
chr2 (571-610)||(32522090-32522129)
chr2 (567-610)||(40301354-40301397)
chr2 (567-630)||(42839361-42839424)
chr2 (567-608)||(32366154-32366195)
[»] scaffold0004 (1 HSPs)
scaffold0004 (567-630)||(227688-227751)
[»] chr8 (18 HSPs)
chr8 (572-631)||(9781196-9781255)
chr8 (567-631)||(28280690-28280754)
chr8 (567-633)||(1184762-1184828)
chr8 (567-630)||(2669630-2669693)
chr8 (570-631)||(34286607-34286668)
chr8 (567-631)||(31079207-31079271)
chr8 (570-632)||(28879038-28879100)
chr8 (594-632)||(35168361-35168399)
chr8 (567-607)||(2563363-2563403)
chr8 (599-631)||(14942391-14942423)
chr8 (566-630)||(35453392-35453456)
chr8 (567-626)||(402129-402188)
chr8 (571-610)||(30973991-30974030)
chr8 (567-610)||(42102109-42102152)
chr8 (567-610)||(42363357-42363400)
chr8 (599-633)||(2563323-2563357)
chr8 (595-632)||(18396916-18396953)
chr8 (603-632)||(30973955-30973984)
[»] chr3 (12 HSPs)
chr3 (571-631)||(38524069-38524129)
chr3 (570-630)||(37601071-37601131)
chr3 (570-631)||(43376678-43376737)
chr3 (592-632)||(45331361-45331401)
chr3 (571-610)||(3645305-3645344)
chr3 (571-610)||(20894505-20894544)
chr3 (571-610)||(29614196-29614235)
chr3 (603-632)||(2086782-2086811)
chr3 (567-608)||(4257342-4257383)
chr3 (603-632)||(4974277-4974306)
chr3 (575-632)||(19307817-19307874)
chr3 (567-632)||(45049415-45049480)
[»] scaffold0091 (1 HSPs)
scaffold0091 (571-638)||(2624-2691)
[»] chr4 (14 HSPs)
chr4 (569-636)||(22397348-22397415)
chr4 (570-625)||(43983426-43983481)
chr4 (570-632)||(7148752-7148814)
chr4 (571-632)||(2141621-2141682)
chr4 (570-631)||(26206398-26206459)
chr4 (576-640)||(48591474-48591538)
chr4 (572-632)||(54412093-54412153)
chr4 (567-610)||(2702756-2702799)
chr4 (571-610)||(15184549-15184588)
chr4 (582-625)||(55852998-55853041)
chr4 (570-608)||(52700588-52700626)
chr4 (567-608)||(9201655-9201696)
chr4 (591-632)||(9319170-9319211)
chr4 (570-631)||(52274164-52274225)
[»] chr1 (14 HSPs)
chr1 (567-641)||(8410120-8410194)
chr1 (570-626)||(6337800-6337856)
chr1 (570-630)||(48819281-48819341)
chr1 (567-610)||(15235201-15235244)
chr1 (567-610)||(15791386-15791429)
chr1 (575-637)||(28870199-28870261)
chr1 (567-601)||(29333428-29333462)
chr1 (569-610)||(37148136-37148177)
chr1 (569-610)||(37156961-37157002)
chr1 (567-610)||(22088452-22088495)
chr1 (567-610)||(32497312-32497355)
chr1 (567-610)||(51162271-51162314)
chr1 (591-633)||(37431145-37431187)
chr1 (567-608)||(41003391-41003432)
[»] chr6 (5 HSPs)
chr6 (567-632)||(2034270-2034335)
chr6 (571-632)||(32165305-32165366)
chr6 (601-632)||(8011135-8011166)
chr6 (567-610)||(10184370-10184413)
chr6 (570-631)||(10755324-10755385)
[»] chr5 (10 HSPs)
chr5 (570-632)||(40696981-40697043)
chr5 (577-632)||(1942990-1943045)
chr5 (567-610)||(15413994-15414037)
chr5 (567-630)||(38461323-38461386)
chr5 (570-632)||(42706776-42706838)
chr5 (567-631)||(28357333-28357397)
chr5 (571-610)||(5203478-5203517)
chr5 (567-610)||(25332279-25332322)
chr5 (567-610)||(33757090-33757133)
chr5 (570-631)||(41534604-41534665)
[»] chr7 (10 HSPs)
chr7 (570-631)||(47511024-47511085)
chr7 (567-631)||(29378626-29378690)
chr7 (567-610)||(24371447-24371490)
chr7 (570-631)||(43818923-43818982)
chr7 (571-608)||(18260890-18260927)
chr7 (561-610)||(21027548-21027597)
chr7 (570-631)||(30094775-30094836)
chr7 (570-608)||(35809094-35809132)
chr7 (567-609)||(42083458-42083500)
chr7 (573-631)||(46743931-46743989)


Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 16 - 567
Target Start/End: Complemental strand, 43797575 - 43797039
Alignment:
Q  16 gttgttcctatttttgtaaggatatcaaacaacaataataattccctcctctctattctttctcagcaagcgacattaacgtttttacttcttcctttgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797575 gttgttcctatttttgtaaggatatcaaacaacaataataattccctcctctctattctttctcagcaagcgacattaacgtttttacttcttcctttgc 43797476  T
Q  116 taatttatagacaacatgtataacttaaaaacccaagaaaacaaatacgtgcatgcatgattaacaattgtctcattgaaaaccttactcaaattaaaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  43797475 taatttatagacaacatgtataacttaaaaacccaagaaaacaaatacgtgcatgcatgattaacaattgtctcattgaaaaccttactc-----aaaga 43797381  T
Q  216 ataccaaagataaaaagtgggacaagaaaaacgaaagttacaaagactaaactcataaggaatcaatgaaacatatactcaagaagaccaaaggataatc 315  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797380 ataccaaagataaaaagttggacaagaaaaacgaaagttacaaagactaaactcataaggaatcaatgaaacatatactcaagaagaccaaaggataatc 43797281  T
Q  316 ctgttaaaaacctcgatgaataatacttactctatttcttaagaaatcatcacgggtaaaatttagaataaggtaaaagaagctaattacatgcacagaa 415  Q
    |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797280 ctgtt----------atgaataatacttactctatttcttaagaaatcatcacgggtaaaatttagaataaggtaaaagaagctaattacatgcacagaa 43797191  T
Q  416 cataaattttaagcatctaaataaaacatcaacaactgaacaaatgtaaaaattaatatagattataatgtaataaaaagcagaaagcatgcaaataata 515  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43797190 cagaaattttaagcatctaaataaaacatcaacaactgaacaaatgtaaaaattaatatagattataatgtaataaaaagcagaaagcatgcaaataata 43797091  T
Q  516 tattgcattaccacctcggcctgtttggattgagtcaattttgagcttacta 567  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  43797090 tattgcattaccacctgggcctgtttggattgagtctattttgagcttacta 43797039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 567 - 741
Target Start/End: Complemental strand, 43796975 - 43796801
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 666  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43796975 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaactacaacttgcttagtcctctataa 43796876  T
Q  667 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaacaccaa 741  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43796875 catacgactcattcaaatcaaataaaccttttcctttctttagttgcttatcactgctgtttctatcaccaccaa 43796801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 12238527 - 12238589
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  12238527 cttataaataatacattaatgcttatttatttgcataagctctaaaataagccaatcccaacg 12238589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 43798447 - 43798345
Alignment:
Q  255 acaaagactaaactcataaggaa-tcaatgaaacatatactcaagaagaccaaaggataatcctg----ttaaaaacctcgatgaataatacttactcta 349  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||||||||    |||||| |||||||||| |||| || |||||    
T  43798447 acaaagactaaactcataaggaaatcaatgaaacatgtactcaagaagacc-aagcataatcctgttaattaaaagcctcgatgaaaaatagttgctcta 43798349  T
Q  350 tttc 353  Q
    ||||    
T  43798348 tttc 43798345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 632
Target Start/End: Complemental strand, 17317200 - 17317159
Alignment:
Q  591 cttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||||| |||||||| |||||||||||    
T  17317200 cttatttatttacataagctcaaaaataagtcaatccaaacg 17317159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Original strand, 32522090 - 32522129
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  32522090 ttataaataatacataaaaacttatttatttacataagct 32522129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 40301397 - 40301354
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  40301397 aaacttataaataatacataaaaacttatttatttgcataagct 40301354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 630
Target Start/End: Original strand, 42839361 - 42839424
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    |||||||| |||||||||| || |||||||||| ||||||||||| | ||||| |||| |||||    
T  42839361 aaacttatgaataatacataaaaacttatttatctacataagctcaataataaaccaacccaaa 42839424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 32366195 - 32366154
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataag 608  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  32366195 aaacttataaataatacataaaaacttatttatttgcataag 32366154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 567 - 630
Target Start/End: Complemental strand, 227751 - 227688
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    ||||||||||||| ||||||||| ||||||||||  ||||||||||||||||||||||||||||    
T  227751 aaacttataaatactacattaatgcttatttattcgcataagctctaaaataagccaatccaaa 227688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 572 - 631
Target Start/End: Complemental strand, 9781255 - 9781196
Alignment:
Q  572 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||    
T  9781255 tataaataatacattaatgcttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 28280754 - 28280690
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||| |||||||||    
T  28280754 aaacttataaataatacataaatgcatatttatttgcataagctctaaaataagctaatccaaac 28280690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 567 - 633
Target Start/End: Complemental strand, 1184828 - 1184762
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacga 633  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |||||||    
T  1184828 aaacttttaaatgatacattaatgcttatttatttgcataagctttaaaataagccaattcaaacga 1184762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 567 - 630
Target Start/End: Complemental strand, 2669693 - 2669630
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    |||||||||||||||||||||   ||||||||||| |||||||| |||||||| ||||||||||    
T  2669693 aaacttataaataatacattagagcttatttatttgcataagctataaaataaaccaatccaaa 2669630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 34286607 - 34286668
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||| |||||||||| ||  ||||||||||||||||||||| |||||||| ||||||||||    
T  34286607 cttatgaataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 631
Target Start/End: Original strand, 31079207 - 31079271
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||||| ||||||||||| ||| | ||||||||  ||||||||||||||||||| |||||||||    
T  31079207 aaacttaaaaataatacataaatgcatatttattaccataagctctaaaataagctaatccaaac 31079271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 28879100 - 28879038
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||| ||||||    
T  28879100 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacg 28879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 594 - 632
Target Start/End: Complemental strand, 35168399 - 35168361
Alignment:
Q  594 atttatttacataagctctaaaataagccaatccaaacg 632  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacg 35168361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 2563403 - 2563363
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataa 607  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  2563403 aaacttataaataatacattaatatttatttatttgcataa 2563363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 631
Target Start/End: Complemental strand, 14942423 - 14942391
Alignment:
Q  599 tttacataagctctaaaataagccaatccaaac 631  Q
    |||||||||||||||||||||||||||||||||    
T  14942423 tttacataagctctaaaataagccaatccaaac 14942391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 630
Target Start/End: Complemental strand, 35453456 - 35453392
Alignment:
Q  566 taaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    ||||||||| |||||||||| ||  ||||||||||| ||||||||  ||||||||||||| ||||    
T  35453456 taaacttatgaataatacataaaagcttatttatttgcataagctaaaaaataagccaattcaaa 35453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 626
Target Start/End: Original strand, 402129 - 402188
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 626  Q
    ||||||||||||||||||| || |||||||||||||| | ||||  |||||||| |||||    
T  402129 aaacttataaataatacataaaaacttatttatttacgttagctaaaaaataagacaatc 402188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Complemental strand, 30974030 - 30973991
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  30974030 ttataaataatacattaatgcttctttatttacataagct 30973991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 42102152 - 42102109
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42102152 aaacttataaataatacataaaaacttatttatttgcataagct 42102109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 42363357 - 42363400
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  42363357 aaacttataaataatacataaaaacttatttatttgcataagct 42363400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 599 - 633
Target Start/End: Complemental strand, 2563357 - 2563323
Alignment:
Q  599 tttacataagctctaaaataagccaatccaaacga 633  Q
    ||||||||| |||||||||||||||||||||||||    
T  2563357 tttacataacctctaaaataagccaatccaaacga 2563323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 595 - 632
Target Start/End: Complemental strand, 18396953 - 18396916
Alignment:
Q  595 tttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacg 18396916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 632
Target Start/End: Complemental strand, 30973984 - 30973955
Alignment:
Q  603 cataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||||||||||||||    
T  30973984 cataagctctaaaataagccaatccaaacg 30973955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 571 - 631
Target Start/End: Complemental strand, 38524129 - 38524069
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||    
T  38524129 ttataaataatacattaatacttatttatttgcataaactctaaaataagttaatccaaac 38524069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 570 - 630
Target Start/End: Original strand, 37601071 - 37601131
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    |||||||||||||||||||   |||||||||| |||||||||||||||||| |||||||||    
T  37601071 cttataaataatacattaacgtttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 43376737 - 43376678
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||||||||||||||||| ||  |||||||| |||||||| |||||||||| |||||||||    
T  43376737 cttataaataatacattaagac--atttatttgcataagctgtaaaataagctaatccaaac 43376678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 632
Target Start/End: Original strand, 45331361 - 45331401
Alignment:
Q  592 ttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  45331361 ttatttatttacataagctaaaaaataagccaatccaaacg 45331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Complemental strand, 3645344 - 3645305
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  3645344 ttataaataatacataaaaacttatttatttacataagct 3645305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Complemental strand, 20894544 - 20894505
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  20894544 ttataaataatacataaaaacttatttatttacataagct 20894505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Complemental strand, 29614235 - 29614196
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  29614235 ttataaataatacataaaaacttatttatttacataagct 29614196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 632
Target Start/End: Original strand, 2086782 - 2086811
Alignment:
Q  603 cataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||||||||||||||    
T  2086782 cataagctctaaaataagccaatccaaacg 2086811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Original strand, 4257342 - 4257383
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataag 608  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  4257342 aaacttataaataatacataaaaacttatttatttgcataag 4257383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 632
Target Start/End: Complemental strand, 4974306 - 4974277
Alignment:
Q  603 cataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||||||||||||||    
T  4974306 cataagctctaaaataagccaatccaaacg 4974277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 575 - 632
Target Start/End: Complemental strand, 19307874 - 19307817
Alignment:
Q  575 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||| ||||| ||||||||||||| ||| |||||||||| |  ||||||||||    
T  19307874 aaataatactttaatgcttatttatttacgtaaactctaaaatatgttaatccaaacg 19307817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 45049415 - 45049480
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||| |||| |||||| ||| |||||||  |||| || ||||||||| |||||||||||    
T  45049415 aaacttataaacaatatattaatgcttgtttatttgtataaactttaaaataagtcaatccaaacg 45049480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 571 - 638
Target Start/End: Original strand, 2624 - 2691
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccct 638  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| |||||| |||||    
T  2624 ttataaataatacattaatacttctttatttgcataaactctaaaataagtcaatacaaacggcccct 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 569 - 636
Target Start/End: Original strand, 22397348 - 22397415
Alignment:
Q  569 acttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccc 636  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||  |||| ||||||||||    
T  22397348 acttataaataatacattaatatttatttatttgtataagctctaaaataaatcaattcaaacgaccc 22397415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 570 - 625
Target Start/End: Original strand, 43983426 - 43983481
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaat 625  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||    
T  43983426 cttataaataatacattaatgcttatttatttgtataagctctaaaataagccaat 43983481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 7148814 - 7148752
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  7148814 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 7148752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 632
Target Start/End: Complemental strand, 2141682 - 2141621
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    |||||||||| |||| ||  ||||||||||| ||||||||||||||||||| ||| ||||||    
T  2141682 ttataaataacacataaaagcttatttatttgcataagctctaaaataagctaattcaaacg 2141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 26206398 - 26206459
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    |||||||||||||||| || || ||||||||| ||||| ||||||||||||  |||||||||    
T  26206398 cttataaataatacataaagacatatttatttgcataaactctaaaataagataatccaaac 26206459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 576 - 640
Target Start/End: Original strand, 48591474 - 48591538
Alignment:
Q  576 aataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccctta 640  Q
    ||||||| || || |||||||||||| |||||||||  |||||||||||||| ||||| ||||||    
T  48591474 aataatatataaaaacttatttatttgcataagctcagaaataagccaatcctaacgaaccctta 48591538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 632
Target Start/End: Original strand, 54412093 - 54412153
Alignment:
Q  572 tataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    |||||||||||||| || | |||||||||| |||||| |  ||||||||||||||||||||    
T  54412093 tataaataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacg 54412153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 2702756 - 2702799
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||||||||||||||| |||||||||||||| | ||||||||    
T  2702756 aaacttataaataatacactaatacttatttatgtgcataagct 2702799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Complemental strand, 15184588 - 15184549
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  15184588 ttataaataatacataaaaacttatttatttacataagct 15184549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 625
Target Start/End: Complemental strand, 55853041 - 55852998
Alignment:
Q  582 acattaatacttatttatttacataagctctaaaataagccaat 625  Q
    ||||||||||||||||||||||||||  |||||||||| |||||    
T  55853041 acattaatacttatttatttacataaattctaaaataaaccaat 55852998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 608
Target Start/End: Original strand, 52700588 - 52700626
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataag 608  Q
    |||||||||||||||| || |||||||||||||||||||    
T  52700588 cttataaataatacataaagacttatttatttacataag 52700626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 9201696 - 9201655
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataag 608  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  9201696 aaacttataaataatacataaaaacttatttatttgcataag 9201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 591 - 632
Target Start/End: Original strand, 9319170 - 9319211
Alignment:
Q  591 cttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  9319170 cttatttatttacataagctaaaaaataagccaaaccaaacg 9319211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 52274164 - 52274225
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||| |||||||||| ||   |||||||||| ||||||||| ||||||||||||| |||||    
T  52274164 cttatcaataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 8410194 - 8410120
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgaccccttaa 641  Q
    |||||||| |||||||||| || |||||||||||| |||| |||||||||||||| ||| ||||||| |||||||    
T  8410194 aaacttatgaataatacataaaaacttatttatttgcataggctctaaaataagctaattcaaacgagcccttaa 8410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 626
Target Start/End: Original strand, 6337800 - 6337856
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatc 626  Q
    ||||| |||||||||| ||  |||||||||||||||||||||||||||||| |||||    
T  6337800 cttatgaataatacataaaagcttatttatttacataagctctaaaataagtcaatc 6337856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 630
Target Start/End: Complemental strand, 48819341 - 48819281
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    ||||| |||||||||||||  || |||||||| ||||||||| ||||||||||||||||||    
T  48819341 cttatgaataatacattaaagctcatttatttgcataagctcaaaaataagccaatccaaa 48819281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 15235201 - 15235244
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15235201 aaacttataaataatacataaaaacttatttatttacataagct 15235244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 15791429 - 15791386
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  15791429 aaacttataaataatacataaaaacttatttatttacataagct 15791386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 637
Target Start/End: Complemental strand, 28870261 - 28870199
Alignment:
Q  575 aaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacgacccc 637  Q
    ||||||||||| |||  |||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  28870261 aaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacgccccc 28870199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 601
Target Start/End: Complemental strand, 29333462 - 29333428
Alignment:
Q  567 aaacttataaataatacattaatacttatttattt 601  Q
    |||||||||||||||||||||||||||||||||||    
T  29333462 aaacttataaataatacattaatacttatttattt 29333428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 610
Target Start/End: Original strand, 37148136 - 37148177
Alignment:
Q  569 acttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37148136 acttataaataatacattaatgcttatttatttgcataagct 37148177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 569 - 610
Target Start/End: Original strand, 37156961 - 37157002
Alignment:
Q  569 acttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  37156961 acttataaataatacattaatgcttatttatttgcataagct 37157002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 22088452 - 22088495
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||| |||||||||||| || |||||||||||||||||||||    
T  22088452 aaacttgtaaataatacataaaaacttatttatttacataagct 22088495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 32497312 - 32497355
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  32497312 aaacttataaataatacataaaaacttatttatttgcataagct 32497355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 51162314 - 51162271
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||| |||||||||||||||| ||||||||||| ||||||||    
T  51162314 aaacttgtaaataatacattaatgcttatttatttgcataagct 51162271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 633
Target Start/End: Complemental strand, 37431187 - 37431145
Alignment:
Q  591 cttatttatttacataagctctaaaataagccaatccaaacga 633  Q
    ||||||||||| || |||||| |||||||||||||||||||||    
T  37431187 cttatttatttgcacaagctcaaaaataagccaatccaaacga 37431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 41003432 - 41003391
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataag 608  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  41003432 aaacttataaataatacataaaaacttatttatttgcataag 41003391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 567 - 632
Target Start/End: Original strand, 2034270 - 2034335
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||| ||  ||||||||||| ||||||||| |||| |||||||||||||||    
T  2034270 aaacttataaataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacg 2034335  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 571 - 632
Target Start/End: Original strand, 32165305 - 32165366
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||| || |||||||||||| ||||| ||||||||||||| ||||||||||    
T  32165305 ttataaataatacataaaaacttatttattttcataaactctaaaataagctaatccaaacg 32165366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 601 - 632
Target Start/End: Original strand, 8011135 - 8011166
Alignment:
Q  601 tacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||||||||||||||||||||||||||    
T  8011135 tacataagctctaaaataagccaatccaaacg 8011166  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 10184370 - 10184413
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  10184370 aaacttataaataatagataaaaacttatttatttacataagct 10184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 10755324 - 10755385
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||  |||||||||||||||||||    
T  10755324 cttatgaataatacgtaaaagcttatttatttgcataagctaaaaaataagccaatccaaac 10755385  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 40697043 - 40696981
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    |||||||||||||||| || |||||||||||| ||||||||| |||||||| |||| ||||||    
T  40697043 cttataaataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 632
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  577 ataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||||||| || ||||||||| || ||||||||| ||||||||||||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 15414037 - 15413994
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  15414037 aaacttatcaataatacattaatacttatttatttgcataagct 15413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 630
Target Start/End: Original strand, 38461323 - 38461386
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaa 630  Q
    ||||||||||||||||||| ||  |||||||||||  |||||||||||||||||  ||||||||    
T  38461323 aaacttataaataatacataaaggcttatttatttttataagctctaaaataagttaatccaaa 38461386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 632
Target Start/End: Complemental strand, 42706838 - 42706776
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaacg 632  Q
    ||||| |||||||| | ||  ||||||||||| ||||||||| ||||||||||||||||||||    
T  42706838 cttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacg 42706776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 28357397 - 28357333
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    |||||||||||||||||||  |  | ||||||||| |||||||| |||||||||| |||||||||    
T  28357397 aaacttataaataatacatataggcatatttatttgcataagctttaaaataagctaatccaaac 28357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Original strand, 5203478 - 5203517
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  5203478 ttataaataatacataaatacttatttatttgcataagct 5203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 25332279 - 25332322
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||||||||||||| |||||| ||||||||||| ||||||||    
T  25332279 aaacttataaataatatattaatgcttatttatttgcataagct 25332322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 610
Target Start/End: Complemental strand, 33757133 - 33757090
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  33757133 aaacttataaataatacataaaaacttatttatttgcataagct 33757090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 41534665 - 41534604
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||| |||||||||| ||  ||||||||||| ||||| ||  |||||||||||||||||||    
T  41534665 cttatgaataatacataaaagcttatttatttgcataatctgaaaaataagccaatccaaac 41534604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 47511085 - 47511024
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||| |||||||||| ||  ||||||||||| ||||||||| |||||||||||||||||||    
T  47511085 cttatgaataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 631
Target Start/End: Complemental strand, 29378690 - 29378626
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||| ||||||||||||| ||  ||||||||||| ||||||||| || ||||||||||||||||    
T  29378690 aaactcataaataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaac 29378626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 567 - 610
Target Start/End: Original strand, 24371447 - 24371490
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||||||||||||||||||||| |||||||||||| ||||||||    
T  24371447 aaacttataaataatacattaaaacttatttatttgcataagct 24371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 43818923 - 43818982
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    |||||||||||||||| || ||  |||||||| ||||||||||||||||||| |||||||||    
T  43818923 cttataaataatacataaagac--atttatttgcataagctctaaaataagctaatccaaac 43818982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 608
Target Start/End: Original strand, 18260890 - 18260927
Alignment:
Q  571 ttataaataatacattaatacttatttatttacataag 608  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18260890 ttataactaatacattaatacttatttatttacataag 18260927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 610
Target Start/End: Original strand, 21027548 - 21027597
Alignment:
Q  561 cttactaaacttataaataatacattaatacttatttatttacataagct 610  Q
    |||| |||||||||||||||||||| || |||||||| ||||||||||||    
T  21027548 cttaataaacttataaataatacataaaaacttatttgtttacataagct 21027597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 570 - 631
Target Start/End: Original strand, 30094775 - 30094836
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||||||||||| ||||| ||  ||||||||  |||||||||||||||||| |||||||||    
T  30094775 cttataaataatatattaagacacatttatttgtataagctctaaaataagctaatccaaac 30094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 608
Target Start/End: Complemental strand, 35809132 - 35809094
Alignment:
Q  570 cttataaataatacattaatacttatttatttacataag 608  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  35809132 cttataaataatacattaatgcttatttatttgcataag 35809094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 609
Target Start/End: Original strand, 42083458 - 42083500
Alignment:
Q  567 aaacttataaataatacattaatacttatttatttacataagc 609  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  42083458 aaacttatgaataatacataaaaacttatttatttacataagc 42083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 631
Target Start/End: Complemental strand, 46743989 - 46743931
Alignment:
Q  573 ataaataatacattaatacttatttatttacataagctctaaaataagccaatccaaac 631  Q
    ||||||||||||| ||  ||||||||||| ||| ||||| ||| |||||||||||||||    
T  46743989 ataaataatacataaaatcttatttatttgcatgagctcaaaagtaagccaatccaaac 46743931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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