View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_30 (Length: 310)
Name: NF7765_low_30
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 287
Target Start/End: Original strand, 8962576 - 8962855
Alignment:
| Q |
7 |
agaatgccttgataacaattttttattaataaaaaataactaagttcaagtttattggtggttatatatannnnnnnnnnnnacaaaataagagggacga |
106 |
Q |
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| T |
8962576 |
agaatgcgttgataacaattttttattaataaaaaataactaagttcaagtttattagtggttatatttttttttctttttg-caaaacaagagggacga |
8962674 |
T |
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| Q |
107 |
aaccaaaacaaaaaataaatttctaattagatgaggtgtagaaacaccaactnnnnnnnggtaagnnnnnnnnnnnnnaaaaagcaaagatattatacat |
206 |
Q |
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| T |
8962675 |
aaccaaaacaaaaaattaatttctaattagatgaggtgtagaaacaccaactaaaaaaacgtaagtttttttgtttttaaaaagcaaagatattaaacat |
8962774 |
T |
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| Q |
207 |
aaaacatctcaaaacacaaaatatgctacaagaatgtcaaaatacaatgcaagatcaatgattacataggacaaaaccccc |
287 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||||| |
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| T |
8962775 |
aaaacatctcaaaaaacaaaatatgctacaagaatgtcaaattataatgtaagatcaaagattacataggacaaaaccccc |
8962855 |
T |
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Back To:
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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 25812750 - 25812661
Alignment:
| Q |
198 |
attatacataaaacatctcaaaacacaaaatatgctacaagaatgtcaaaatacaatgcaagatcaatgattacataggacaaaaccccc |
287 |
Q |
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| T |
25812750 |
attaaacataaaacatcccaaagcacaagatatgctataaaaatgtcaaaatagagggcaagatcaaagattgcataggacaaaaccccc |
25812661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 6984452 - 6984531
Alignment:
| Q |
207 |
aaaacatctcaaaacacaaaatatgctacaagaatgtcaaaatacaatgcaagatcaatgattacataggacaaaacccc |
286 |
Q |
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||||||||||||||| ||| |||||||| | |||||||||||||| |||||||||| |||| || | ||||||||||| |
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| T |
6984452 |
aaaacatctcaaaactcaagatatgctatgataatgtcaaaatacagggcaagatcaaagattgcagaagacaaaacccc |
6984531 |
T |
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