View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_31 (Length: 308)
Name: NF7765_low_31
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_31 |
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| [»] scaffold0141 (1 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: scaffold0141 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 34808 - 34518
Alignment:
| Q |
18 |
atccaacttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34808 |
atccaacttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcat |
34709 |
T |
|
| Q |
118 |
cactttcaagtcttcaactacaaattcaatttgtagtaataatatcttgctggacatttttgtaaaataattctactagaaaagcttcgcttcaacttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34708 |
cactttcaagtcttcaactacaaattcaatttgtagtaataatatcttgctggacatttttgtaaaataattctactagaaaagcttcgcttcaacttct |
34609 |
T |
|
| Q |
218 |
aactgaaccacacaaaagcttctttcacttcaatctcaattcctcaatctcacaccatatccaacattatcatcataatcatttcaattcc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34608 |
aactgaaccacacaaaagcttctttcacttcaatctcaattcctcaatctcacaccatatccaacattatcatcataatcatttcaattcc |
34518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 80004 - 80294
Alignment:
| Q |
18 |
atccaacttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
80004 |
atccaacttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcat |
80103 |
T |
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| Q |
118 |
cactttcaagtcttcaactacaaattcaatttgtagtaataatatcttgctggacatttttgtaaaataattctactagaaaagcttcgcttcaacttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
80104 |
cactttcaagtcttcaactacaaattcaatttgtagtaataatatcttgctggacatttttgtaaaataattctactagaaaagcttcgcttcaacttct |
80203 |
T |
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| Q |
218 |
aactgaaccacacaaaagcttctttcacttcaatctcaattcctcaatctcacaccatatccaacattatcatcataatcatttcaattcc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
80204 |
aactgaaccacacaaaagcttctttcacttcaatctcaattcctcaatctcacaccatatccaacattatcatcataatcatttcaattcc |
80294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 43133890 - 43133726
Alignment:
| Q |
25 |
ttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcatcactttc |
124 |
Q |
| |
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|||||| |||||||||||| | ||||||||||||||||| || ||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||| |
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| T |
43133890 |
ttttttttctttcaaaaagcaaaaactcaataattaacaccaacaccatcttgcaaataaaaatcaaaactaacatccaattattaatttcatcactttc |
43133791 |
T |
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| Q |
125 |
aagtcttcaactacaaattcaatttgtagtaataatatcttgctggacatttttgtaaaataatt |
189 |
Q |
| |
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||||||||| | |||||| || || |||||||||||||||| |||||||||||||||||||||| |
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| T |
43133790 |
aagtcttcacccacaaatccagttcgtagtaataatatcttattggacatttttgtaaaataatt |
43133726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 43133634 - 43133570
Alignment:
| Q |
201 |
gcttcgcttcaacttctaactgaaccacacaaaagcttctttcacttcaatctcaattcctcaat |
265 |
Q |
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||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43133634 |
gcttcacttcaactgctaactaaaccacacaaaagcttctctcacttcaatctcaattcctcaat |
43133570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 189
Target Start/End: Complemental strand, 5034657 - 5034493
Alignment:
| Q |
25 |
ttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcatcactttc |
124 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||||||| |||||||| | ||||||| |||||||||||| |
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| T |
5034657 |
ttttttttctttcaaaaagcacaaactcaatgattaacaccaacaccatcttgcaaataaaaatcaaaactaacatccaattattaatttcatcactttc |
5034558 |
T |
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| Q |
125 |
aagtcttcaactacaaattcaatttgtagtaataatatcttgctggacatttttgtaaaataatt |
189 |
Q |
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||||||||| | |||||| | || |||||||||||||||| |||||||||||||||||||||| |
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| T |
5034557 |
aagtcttcacccacaaatccggttcgtagtaataatatcttattggacatttttgtaaaataatt |
5034493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 5034409 - 5034346
Alignment:
| Q |
202 |
cttcgcttcaacttctaactgaaccacacaaaagcttctttcacttcaatctcaattcctcaat |
265 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5034409 |
cttcacttcaactgctaactaaaccacacaaaagcttctttcacttcaatctcaattcctcaat |
5034346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 26006596 - 26006495
Alignment:
| Q |
25 |
ttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcatcactttc |
124 |
Q |
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|||||| |||||||||||| ||||||||||| ||||||| |||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||| || ||| |
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| T |
26006596 |
ttttttttctttcaaaaagcacaaactcaatgattaacaccaccaccatcttccaaataagaatcaaaactaacatccattaattaaattcattaccttc |
26006497 |
T |
|
| Q |
125 |
aa |
126 |
Q |
| |
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|| |
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|
| T |
26006496 |
aa |
26006495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 27071284 - 27071385
Alignment:
| Q |
25 |
ttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcatcactttc |
124 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||| || ||| |
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| T |
27071284 |
ttttttttctttcaaaaagcacgaactcaataattaacaccaccaccatcttccaaataagaatcaaaactaacatccattaattaaattcattaccttc |
27071383 |
T |
|
| Q |
125 |
aa |
126 |
Q |
| |
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|| |
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|
| T |
27071384 |
aa |
27071385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 27207029 - 27206928
Alignment:
| Q |
25 |
ttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcatcactttc |
124 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||| || ||| |
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| T |
27207029 |
ttttttttctttcaaaaagcacgaactcaataattaacaccaccaccatcttccaaataagaatcaaaactaacatccattaattaaattcattaccttc |
27206930 |
T |
|
| Q |
125 |
aa |
126 |
Q |
| |
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|| |
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|
| T |
27206929 |
aa |
27206928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 126
Target Start/End: Complemental strand, 24376282 - 24376181
Alignment:
| Q |
25 |
ttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaacatcaatttattaaattcatcactttc |
124 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||| || ||| |
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| T |
24376282 |
ttttttttctttcaaaaagcacgaactcaataattaacaccaccaccatcttccaaataagaatcaaaactaacatccattaattaaattcattaccttc |
24376183 |
T |
|
| Q |
125 |
aa |
126 |
Q |
| |
|
|| |
|
|
| T |
24376182 |
aa |
24376181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 27750271 - 27750196
Alignment:
| Q |
21 |
caacttttttctctttcaaaaagtacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaa |
97 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||||| |||| |
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| T |
27750271 |
caacttttttct-tttaaaaatttacaaactcaataattaacaccaccaccatcttccaaataagaatcaaaactaa |
27750196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 34121582 - 34121635
Alignment:
| Q |
44 |
tacaaactcaataattaacatcaccaccatcttgcaaataaaaatcaaatctaa |
97 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||| ||||||| |||| |
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| T |
34121582 |
tacaaactcaataattaacaccaccaccatcttccaaataagaatcaaaactaa |
34121635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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