View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_low_33 (Length: 301)

Name: NF7765_low_33
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_low_33
NF7765_low_33
[»] chr5 (24 HSPs)
chr5 (1-263)||(12034467-12034729)
chr5 (1-75)||(15480522-15480598)
chr5 (1-75)||(24346546-24346620)
chr5 (1-76)||(4481608-4481683)
chr5 (10-77)||(13358364-13358431)
chr5 (1-80)||(37782095-37782174)
chr5 (5-75)||(6919243-6919313)
chr5 (1-75)||(17352480-17352553)
chr5 (1-75)||(18333510-18333584)
chr5 (1-75)||(24269916-24269989)
chr5 (1-75)||(41666802-41666876)
chr5 (1-73)||(41667038-41667110)
chr5 (1-73)||(42295546-42295618)
chr5 (1-75)||(6637802-6637876)
chr5 (1-75)||(27133038-27133112)
chr5 (1-46)||(6637596-6637641)
chr5 (1-74)||(24647662-24647735)
chr5 (1-69)||(1564612-1564680)
chr5 (19-75)||(8081177-8081233)
chr5 (1-73)||(9368562-9368634)
chr5 (1-69)||(15438848-15438916)
chr5 (1-73)||(17017136-17017208)
chr5 (3-75)||(20510689-20510761)
chr5 (1-73)||(24346782-24346854)
[»] chr4 (31 HSPs)
chr4 (1-73)||(400610-400682)
chr4 (1-73)||(21684965-21685037)
chr4 (1-75)||(28245571-28245645)
chr4 (1-69)||(22827509-22827577)
chr4 (1-73)||(22845492-22845564)
chr4 (1-73)||(35788626-35788698)
chr4 (1-69)||(44118904-44118972)
chr4 (1-76)||(39902608-39902683)
chr4 (1-75)||(6218404-6218478)
chr4 (1-74)||(27634126-27634199)
chr4 (5-75)||(31254456-31254526)
chr4 (1-74)||(18528262-18528335)
chr4 (1-73)||(22863441-22863513)
chr4 (1-73)||(27634561-27634633)
chr4 (1-73)||(50543612-50543684)
chr4 (2-73)||(9279194-9279265)
chr4 (19-74)||(17111734-17111789)
chr4 (1-47)||(11036791-11036837)
chr4 (19-73)||(20095259-20095313)
chr4 (1-75)||(21498760-21498834)
chr4 (1-75)||(22231118-22231192)
chr4 (1-75)||(36685920-36685993)
chr4 (1-73)||(6778706-6778779)
chr4 (1-74)||(35788860-35788933)
chr4 (1-74)||(35797022-35797095)
chr4 (1-50)||(50858998-50859047)
chr4 (1-73)||(13555512-13555584)
chr4 (1-73)||(21498321-21498393)
chr4 (1-69)||(27464293-27464361)
chr4 (1-73)||(35645810-35645882)
chr4 (3-75)||(53828336-53828408)
[»] scaffold0766 (1 HSPs)
scaffold0766 (1-79)||(6235-6313)
[»] chr2 (21 HSPs)
chr2 (1-75)||(25082582-25082656)
chr2 (1-74)||(37812543-37812616)
chr2 (1-73)||(17719367-17719439)
chr2 (3-69)||(14927073-14927139)
chr2 (1-75)||(16419467-16419541)
chr2 (1-75)||(33606099-33606173)
chr2 (1-75)||(37812313-37812387)
chr2 (1-75)||(40379254-40379328)
chr2 (24-69)||(11099671-11099716)
chr2 (1-73)||(94065-94137)
chr2 (5-73)||(14466459-14466527)
chr2 (1-73)||(40379489-40379561)
chr2 (5-75)||(5711488-5711558)
chr2 (1-75)||(17525144-17525218)
chr2 (26-75)||(18607079-18607128)
chr2 (1-73)||(2029736-2029808)
chr2 (1-73)||(4662198-4662270)
chr2 (1-74)||(9927875-9927950)
chr2 (1-73)||(15464736-15464808)
chr2 (1-73)||(17525383-17525455)
chr2 (1-73)||(32884074-32884146)
[»] chr3 (23 HSPs)
chr3 (1-75)||(35038239-35038313)
chr3 (1-69)||(30179753-30179821)
chr3 (1-73)||(54567859-54567931)
chr3 (1-74)||(16239557-16239630)
chr3 (1-54)||(45139016-45139069)
chr3 (1-69)||(50083126-50083194)
chr3 (1-74)||(54368482-54368555)
chr3 (1-73)||(11589752-11589824)
chr3 (5-73)||(35038477-35038545)
chr3 (3-70)||(30138034-30138101)
chr3 (3-70)||(30147585-30147652)
chr3 (3-73)||(4155291-4155361)
chr3 (1-75)||(20303109-20303183)
chr3 (1-75)||(20327659-20327733)
chr3 (1-73)||(34610527-34610600)
chr3 (1-54)||(45138847-45138900)
chr3 (1-69)||(2806331-2806399)
chr3 (1-73)||(16926994-16927066)
chr3 (1-73)||(20327894-20327966)
chr3 (1-77)||(23708269-23708345)
chr3 (1-77)||(23726725-23726801)
chr3 (1-77)||(23745181-23745257)
chr3 (19-75)||(39620291-39620347)
[»] chr7 (27 HSPs)
chr7 (1-74)||(36277271-36277344)
chr7 (1-74)||(3392948-3393021)
chr7 (1-73)||(21054998-21055070)
chr7 (1-73)||(47710410-47710482)
chr7 (1-73)||(47722066-47722138)
chr7 (1-72)||(44874391-44874462)
chr7 (1-75)||(31485469-31485543)
chr7 (24-73)||(28080632-28080681)
chr7 (7-75)||(3519776-3519844)
chr7 (1-69)||(23839122-23839190)
chr7 (1-73)||(48661600-48661672)
chr7 (3-74)||(6634821-6634892)
chr7 (1-76)||(26562118-26562193)
chr7 (4-75)||(43688207-43688278)
chr7 (1-75)||(48243106-48243178)
chr7 (1-75)||(26239961-26240035)
chr7 (5-75)||(29469805-29469875)
chr7 (1-73)||(43075355-43075428)
chr7 (1-73)||(43085582-43085655)
chr7 (1-73)||(43089253-43089326)
chr7 (3-75)||(4268019-4268091)
chr7 (1-73)||(5522846-5522918)
chr7 (3-75)||(6001482-6001554)
chr7 (1-73)||(9689135-9689207)
chr7 (5-73)||(29469572-29469640)
chr7 (1-52)||(32879659-32879711)
chr7 (1-73)||(42985168-42985240)
[»] chr1 (25 HSPs)
chr1 (1-73)||(42586484-42586555)
chr1 (1-58)||(39348397-39348454)
chr1 (3-75)||(35772229-35772301)
chr1 (1-75)||(25145530-25145604)
chr1 (1-58)||(17452724-17452781)
chr1 (1-73)||(2859672-2859744)
chr1 (1-73)||(15986378-15986450)
chr1 (1-73)||(17452873-17452945)
chr1 (5-73)||(26173505-26173573)
chr1 (3-75)||(26177108-26177180)
chr1 (1-73)||(38080572-38080643)
chr1 (1-73)||(52650816-52650888)
chr1 (1-75)||(4112815-4112890)
chr1 (3-73)||(20208573-20208643)
chr1 (19-69)||(21626402-21626452)
chr1 (1-75)||(35892256-35892330)
chr1 (5-75)||(51459879-51459949)
chr1 (1-70)||(2859437-2859506)
chr1 (1-46)||(4113051-4113096)
chr1 (1-74)||(25145765-25145838)
chr1 (1-74)||(25713359-25713432)
chr1 (1-54)||(31181558-31181611)
chr1 (1-54)||(40079138-40079191)
chr1 (1-73)||(41035872-41035944)
chr1 (3-75)||(52961547-52961619)
[»] chr8 (28 HSPs)
chr8 (1-75)||(5931994-5932068)
chr8 (5-75)||(39052586-39052656)
chr8 (1-54)||(34236693-34236746)
chr8 (1-54)||(38447472-38447525)
chr8 (1-69)||(3961444-3961512)
chr8 (1-69)||(7729912-7729980)
chr8 (1-73)||(24532466-24532538)
chr8 (1-73)||(39052974-39053046)
chr8 (3-73)||(10449967-10450037)
chr8 (1-75)||(28069402-28069476)
chr8 (1-69)||(22638224-22638292)
chr8 (1-73)||(36917484-36917556)
chr8 (1-69)||(38476248-38476316)
chr8 (4-75)||(15042718-15042789)
chr8 (6-69)||(29006062-29006125)
chr8 (5-75)||(11232243-11232313)
chr8 (1-75)||(17477030-17477104)
chr8 (1-75)||(19256631-19256705)
chr8 (1-74)||(31197813-31197886)
chr8 (3-73)||(34842645-34842715)
chr8 (1-54)||(8466533-8466586)
chr8 (1-54)||(8929003-8929056)
chr8 (1-69)||(5940029-5940097)
chr8 (1-73)||(17469785-17469857)
chr8 (6-74)||(18004146-18004214)
chr8 (1-73)||(19256865-19256937)
chr8 (1-73)||(25325613-25325685)
chr8 (1-69)||(29907771-29907839)
[»] chr6 (20 HSPs)
chr6 (1-75)||(31961143-31961217)
chr6 (1-75)||(4868622-4868696)
chr6 (1-75)||(6054368-6054442)
chr6 (1-75)||(6542754-6542827)
chr6 (5-75)||(7638639-7638709)
chr6 (1-74)||(27656424-27656497)
chr6 (1-73)||(9704987-9705059)
chr6 (1-73)||(27653184-27653256)
chr6 (3-73)||(6542990-6543060)
chr6 (1-75)||(9705219-9705293)
chr6 (1-75)||(17147705-17147779)
chr6 (1-75)||(27772911-27772985)
chr6 (1-74)||(3680212-3680285)
chr6 (1-74)||(6400665-6400738)
chr6 (1-54)||(19639158-19639211)
chr6 (1-73)||(4868858-4868930)
chr6 (1-73)||(12199730-12199802)
chr6 (5-73)||(13353168-13353236)
chr6 (1-73)||(33494506-33494578)
chr6 (5-73)||(33796293-33796361)
[»] scaffold0048 (1 HSPs)
scaffold0048 (8-75)||(82041-82108)
[»] scaffold0519 (1 HSPs)
scaffold0519 (5-75)||(2116-2186)
[»] scaffold0334 (1 HSPs)
scaffold0334 (1-74)||(4474-4547)
[»] scaffold0092 (1 HSPs)
scaffold0092 (8-73)||(5622-5687)
[»] scaffold0060 (1 HSPs)
scaffold0060 (5-73)||(20542-20610)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 12034729 - 12034467
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaataggtaggaagtagtcccacaac 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  12034729 tgtgaggtgaggatttcccccatttataaacacgttggcaggccatctcttatccgatatgggactcttaacacaaataggtaggaagtagtcccacaac 12034630  T
Q  101 ctccatcatccaaaaactacatttttgtgcttcgaatagtgtaaaactgaataatttaggtcaaggattcactacttttatatagatttgcgagttctac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  12034629 ctccatcatccaaaaactacatttttgtgcttcgaatagtgtaaaattgaataatttaggtcaatgattcaatacttttatatagatttgcgagttctac 12034530  T
Q  201 caatgagagaacaaacctaggagatgagcatgcctctctgcgcaacacattagaggaaataca 263  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12034529 caatcagagaacaaacctaggagatgagcatgcctctctacgcaacacattagaggaaataca 12034467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15480598 - 15480522
Alignment:
Q  1 tgtgaggtgaggatt--tctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||||||||  || |||| ||||||||||||||||||||||| || |||||||| || |||||||||||||    
T  15480598 tgtgaggtgaggattgatcccccacttataaacacgttgtcaggccatgtcatatctgatgtgggactcttaacaca 15480522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24346546 - 24346620
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || |||| ||| || |||||||||||||    
T  24346546 tgtgaggtgaggattacccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacaca 24346620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4481608 - 4481683
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaa 76  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| ||  |||| ||| || ||||||||||||||    
T  4481608 tgtgacgtgaggattgcccccatttataaacacattgtcaggccaacttctatccgatgtgggactcttaacacaa 4481683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 13358431 - 13358364
Alignment:
Q  10 aggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaa 77  Q
    |||||| | |||| |||||||||| ||||||| | ||||| |||||||| ||||||||||||||||||    
T  13358431 aggattacccccacttataaacacattgtcagccaatctcctatctgatgtgagactcttaacacaaa 13358364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 37782095 - 37782174
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaatag 80  Q
    |||||||||| |||| | |||| |||||||||| ||||||| ||||| | |||| ||||||||||| |||||| ||||||    
T  37782095 tgtgaggtgatgattgcccccacttataaacacattgtcagaccatcacctatccgatatgagactattaacaaaaatag 37782174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 6919243 - 6919313
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| | |||||||| |||||||| |||||||||| |||| || |||||||||||||    
T  6919243 aggtgaggattgcccccactaataaacacattgtcaggtcatctcttatttgatgtgggactcttaacaca 6919313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17352480 - 17352553
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||| |||| | |||| |||||||||| |||||||| ||||||||||| ||| || |||||||||||||    
T  17352480 tgtgaggtgatgattgcccccacttataaacacattgtcaggtcatctcttatc-gatgtgggactcttaacaca 17352553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 18333510 - 18333584
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| ||||||| ||||||| |||| ||| || || ||||||||||    
T  18333510 tgtgaggtgaggattacccccacttataaacacattgtcagaccatctcctatccgatgtgggattcttaacaca 18333584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 24269916 - 24269989
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || |||| ||| || |||||||||||||    
T  24269916 tgtgaggtgaggattac-cccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacaca 24269989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41666802 - 41666876
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||||    
T  41666802 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacaca 41666876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41667038 - 41667110
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||    
T  41667038 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 41667110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42295618 - 42295546
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| |||||| |||||||||  || |||||||| ||| || ||||| || |||||||||||    
T  42295618 tgtgaggtgaggattgctcccacttataaacaaattatcaggccaactcctaactgatgtgggactcttaaca 42295546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6637876 - 6637802
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||| |||| |||||||| |||||| || | ||| || |||||||||||||    
T  6637876 tgtgaggtgaggattgcacccacttatagacacattgtcaggtcatctcctaaccgatgtgggactcttaacaca 6637802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 27133038 - 27133112
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | | || |||||||||  ||||||||||| ||| || | ||| ||||||||||||||||    
T  27133038 tgtgaggtgaggattgccctcacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaacaca 27133112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6637641 - 6637596
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccat 46  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||    
T  6637641 tgtgaggtgaggattacccccacttataaacacattgtcaggccat 6637596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 24647735 - 24647662
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| |  ||| |||||||||| ||||| ||||||| | |||| ||| || ||||||||||||    
T  24647735 tgtgaggtgaggattgccaccagttataaacacattgtccggccatcacctatccgatgtgggactcttaacac 24647662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 1564612 - 1564680
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||| ||||||||| | |||| |||||| ||| ||||||| |||||||||||| ||| || |||||||    
T  1564612 tgtgatgtgaggattgcccccacttataatcacattgtcagaccatctcttatccgatgtgggactctt 1564680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 8081177 - 8081233
Alignment:
Q  19 cccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||| |||||||||| |||||||||||| || |||| ||| || |||||||||||||    
T  8081177 cccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacaca 8081233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9368634 - 9368562
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| |  ||| |||||||||| |||||| |||||||| |||| ||| |  |||||||||||    
T  9368634 tgtgaggtgaggattgcctccacttataaacacattgtcacgccatctcctatccgatgtatgactcttaaca 9368562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 15438916 - 15438848
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| | |||| |||||||||| || |||| ||||||| |||| ||| ||| ||||||    
T  15438916 tgtgaggtgaggattgcccccacttataaacacattatcagaccatctcatatccgatgtgaaactctt 15438848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17017136 - 17017208
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||| ||||   |||| |||||||||| |||||  |||||||  ||||||||||| |||||||||||    
T  17017136 tgtgaggtgatgattgaccccacttataaacacattgtcgagccatcttctatctgatatgggactcttaaca 17017208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 20510689 - 20510761
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||| | |||| |||||||||  ||||||||||||| | |||| ||| || | |||||||||||    
T  20510689 tgaggtgaggattgcccccacttataaacatattgtcaggccatcacctatccgatgtggggctcttaacaca 20510761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24346782 - 24346854
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| ||| | |||| ||||||| || |||||||||||| ||||||  ||| || |||||||||||    
T  24346782 tgtgaggtgagtattacccccacttataaatacattgtcaggccatgtcttattcgatgtgggactcttaaca 24346854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 400610 - 400682
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||||| |||| |||||||||| ||||||| ||||||| |||||||| ||||||||||||||    
T  400610 tgtgaggtgaggatttcccccacttataaacacattgtcagaccatctcatatctgatgtgagactcttaaca 400682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21685037 - 21684965
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||| || |||| ||| ||||||||||||||    
T  21685037 tgtgaggtgaggatttatcccacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaaca 21684965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28245571 - 28245645
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||| | |||| ||| ||||||||||||||||    
T  28245571 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgagactcttaacaca 28245645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22827577 - 22827509
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| | |||| |||||||||||||||||||||||||| |||| ||| || |||||||    
T  22827577 tgtgaggtgaggattgcccccacttataaacacgttgtcaggccatctcctatccgatgtgggactctt 22827509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22845492 - 22845564
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || |||||||| || |||||||||||    
T  22845492 tgtgaggtgaggattacccccacttataaacacattgtcaggccatgtcatatctgatgtgggactcttaaca 22845564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35788698 - 35788626
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || |||||||| || |||||||||||    
T  35788698 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctatctgatgtgggactcttaaca 35788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44118904 - 44118972
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||||||||||| ||| || |||||||    
T  44118904 tgtgaggtgaggattacccccacttataaacacattgtcaggccatctcttatccgatgtgggactctt 44118972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39902608 - 39902683
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaa 76  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || |||| ||| || ||||||||||||||    
T  39902608 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacacaa 39902683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6218478 - 6218404
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||| |||| | |||| |||||||||| |||| ||| |||||| |||||||| ||||||||||||||||    
T  6218478 tgtgaggtgatgattgcccccacttataaacacattgttaggtcatctcctatctgatgtgagactcttaacaca 6218404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27634126 - 27634199
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || |||| ||| || ||||||||||||    
T  27634126 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacac 27634199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 31254456 - 31254526
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||||    
T  31254456 aggtgaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaacaca 31254526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18528262 - 18528335
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| |  ||| |||||||||| ||| || |||||||| ||| |||| |||||||||||||||    
T  18528262 tgtgaggtgaggattgccgccacttataaacacattgccatgccatctcgtatttgatgtgagactcttaacac 18528335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22863513 - 22863441
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||| |||||||||| | |||| |||||||||| ||||||||||||||  | || ||| ||||||||||||||    
T  22863513 tgtggggtgaggattgcccccacttataaacacattgtcaggccatcttctgtccgatgtgagactcttaaca 22863441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27634561 - 27634633
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| | |||||||| |||||||||||| || |||| ||| || |||||||||||    
T  27634561 tgtgaggtgaggattgcccccactcataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 27634633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 50543612 - 50543684
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||| |||| ||||||||||||| | |||| ||| || |||||||||||    
T  50543612 tgtgaggtgaggattgcccccacttatacacacattgtcaggccatcacctatccgatgtgggactcttaaca 50543684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 9279265 - 9279194
Alignment:
Q  2 gtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||| |||| | |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||    
T  9279265 gtgaggtgatgattgcccccacttataaacacattgtcaggccatcacctatccgatgtgcgactcttaaca 9279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 17111789 - 17111734
Alignment:
Q  19 cccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    |||| |||||||||| ||||||||||||| | |||||||| || ||||||||||||    
T  17111789 cccacttataaacacattgtcaggccatcacctatctgatgtgggactcttaacac 17111734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11036791 - 11036837
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatc 47  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||||    
T  11036791 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatc 11036837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 20095313 - 20095259
Alignment:
Q  19 cccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||| ||||||| || ||| ||||||| ||||||||| ||||||||||||||    
T  20095313 cccatttctaaacacattatcatgccatctattatctgatgtgagactcttaaca 20095259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 21498834 - 21498760
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||||    
T  21498834 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacaca 21498760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22231118 - 22231192
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||||||||   |||| |||||||||| |||||||||||| || |||| ||| |  |||||||||||||    
T  22231118 tgtgaggtgaggattgtccccacttataaacacattgtcaggccatatcctatccgatgtaggactcttaacaca 22231192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36685920 - 36685993
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||  | ||||||||||||||| |||||||| ||| || ||| |||| || |||||||||||||    
T  36685920 tgtgaggtgaggataacccccatttataaacacattgtcaggtcatttcatat-tgatgtgggactcttaacaca 36685993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6778706 - 6778779
Alignment:
Q  1 tgtgaggtgaggatt-tctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| |||||  ||||||||| | |||||||||||| || |||| ||| || |||||||||||    
T  6778706 tgtgaggtgaggattgtctcctctttataaactcattgtcaggccatgtcatatccgatgtgggactcttaaca 6778779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35788933 - 35788860
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    |||||| |||||||| | |||| |||||||||| |||||||||||| |  |||| ||| || ||||||||||||    
T  35788933 tgtgagatgaggattgcccccacttataaacacattgtcaggccatgttctatccgatgtgggactcttaacac 35788860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 35797022 - 35797095
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||  |||||| | |||||| | || |||||| ||||||||||||    
T  35797022 tgtgaggtgaggattgcccccacttataaacatattgtcatgtcatctcctgtccgatatgggactcttaacac 35797095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 50859047 - 50858998
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctct 50  Q
    ||||||||||||||||| |||| |||||||||| |  |||||||||||||    
T  50859047 tgtgaggtgaggatttcacccacttataaacacttattcaggccatctct 50858998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13555512 - 13555584
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||||| |||| |||||| ||| ||||||  ||||| | |||| ||| || |||||||||||    
T  13555512 tgtgaggtgaggatttcccccacttataagcacattgtcaaaccatcacctatccgatgtgggactcttaaca 13555584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21498393 - 21498321
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||    
T  21498393 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 21498321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27464293 - 27464361
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| |  ||| |||||||||| ||||||||  |||||||||| ||| || |||||||    
T  27464293 tgtgaggtgaggattgcctccacttataaacactttgtcaggaaatctcttatccgatgtgggactctt 27464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35645810 - 35645882
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||||||| ||||| | |||  ||| || |||||||||||    
T  35645810 tgtgaggtgaggattgcccccacttataaacacattgtcagaccatcacctattcgatgtgggactcttaaca 35645882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 53828336 - 53828408
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||||    
T  53828336 tgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacaca 53828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6313 - 6235
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaata 79  Q
    ||||||||||||||| | |||| |||||||||| ||||||| | |||||||||||||| || |||||||||||||||||    
T  6313 tgtgaggtgaggattgcccccacttataaacacattgtcagactatctcttatctgatgtgggactcttaacacaaata 6235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25082582 - 25082656
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||| |||| | || | |||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  25082582 tgtgaggtgatgattgcccctacttataaacacattgtcagaccatctcttatctgatatgagactcttaacaca 25082656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 37812543 - 37812616
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||| |||||||| ||| ||||||| ||| || ||||||||||||    
T  37812543 tgtgaggtgaggattgcccccacttataaacacattgtcaggtcatgtcttatccgatgtgggactcttaacac 37812616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17719439 - 17719367
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||    
T  17719439 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 17719367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 14927139 - 14927073
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||| | |||| |||||||||| |||||||| ||||||||||| ||| || |||||||    
T  14927139 tgaggtgaggattgcccccacttataaacacattgtcaggtcatctcttatccgatgtgtgactctt 14927073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 16419541 - 16419467
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| ||||||| |||| || |||| ||| || |||||||||||||    
T  16419541 tgtgaggtgaggattgcccccacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaacaca 16419467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33606099 - 33606173
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | || | |||||||||| || |||||||||||| |||| ||| || |||||||||||||    
T  33606099 tgtgaggtgaggattgcccctacttataaacacattttcaggccatctcctatccgatgtgggactcttaacaca 33606173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 37812313 - 37812387
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||||||||   |||| |||||||||| |||||||||||| || |||| ||| || |||||||||||||    
T  37812313 tgtgaggtgaggattgtccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacaca 37812387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 40379254 - 40379328
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||||||||  |||||||||||| | |||| ||| || |||||||||||||    
T  40379254 tgtgaggtgaggattgcccccacttataaacacactgtcaggccatcacctatccgatgtgggactcttaacaca 40379328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 11099671 - 11099716
Alignment:
Q  24 ttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    |||||||||| |||||||| ||||||||||||||| ||||||||||    
T  11099671 ttataaacacattgtcaggtcatctcttatctgatgtgagactctt 11099716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 94065 - 94137
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||||||||  |||||||||||| | |||| ||| || |||||||||||    
T  94065 tgtgaggtgaggattgcccccacttataaacacactgtcaggccatcacctatccgatgtgggactcttaaca 94137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 14466459 - 14466527
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| |||||| |||||||||| |||||||||||| || | || ||| || |||||||||||    
T  14466459 aggtgaggattgctcccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 14466527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40379489 - 40379561
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||||||||  |||||||||||| | |||| ||| || |||||||||||    
T  40379489 tgtgaggtgaggattgcccccacttataaacacactgtcaggccatcacctatccgatgtgggactcttaaca 40379561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 5711488 - 5711558
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||||    
T  5711488 aggtgaggattgcccccacttataaacacattgtcaggccatttcctttccgatgtgggactcttaacaca 5711558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17525144 - 17525218
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||| ||||||||||  |||||||||||||||| |||||||| ||| || | || ||| ||||||| ||||||||    
T  17525144 tgtgcggtgaggattcttcccatttataaacacattgtcaggtcatgtcctgtccgatgtgagacttttaacaca 17525218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 18607079 - 18607128
Alignment:
Q  26 ataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||| ||||||||||||| | |||||||| ||||||||| ||||||    
T  18607079 ataaacacattgtcaggccatcacctatctgatgtgagactctaaacaca 18607128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2029808 - 2029736
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| |  ||| |||||||||| |||||||| ||| || |||| ||| || |||||||||||    
T  2029808 tgtgaggtgaggattgcctccacttataaacacattgtcaggtcatgtcctatccgatgtgggactcttaaca 2029736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 4662270 - 4662198
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  |||||||| ||| || |||| ||| || |||||||||||    
T  4662270 tgtgaggtgaggattgcccccacttataaacatattgtcaggtcatgtcctatccgatgtgggactcttaaca 4662198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9927950 - 9927875
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgata--tgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||| ||||||| ||||||  |||| ||||  || ||||||||||||    
T  9927950 tgtgaggtgaggattacccccacttataaacacattgtcagaccatcttctatccgatatttgggactcttaacac 9927875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 15464808 - 15464736
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||| | |||| ||||||| ||||||| ||| |||| ||| ||||||||||    
T  15464808 tgtgaggtgaggattgcccccacttaaatacacattgtcagaccatctcatatttgatgtgaaactcttaaca 15464736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17525383 - 17525455
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||||||| |||| || | || ||| || |||||||||||    
T  17525383 tgtgaggtgaggattgcccccacttataaacacattgtcagaccatgtcatgtccgatgtgggactcttaaca 17525455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32884146 - 32884074
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||    
T  32884146 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 32884074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35038239 - 35038313
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||||| |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||||    
T  35038239 tgtgaggtgaggatttcccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaacaca 35038313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30179753 - 30179821
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| | |||| |||||||||| |||||||| ||||||||||||||| || |||||||    
T  30179753 tgtgaggtgaggattacccccacttataaacacattgtcaggtcatctcttatctgatgtgggactctt 30179821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 54567931 - 54567859
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||||| |||| |||||||||| |||||||||||| || |||| |||||  |||||||||||    
T  54567931 tgtgaggtgaggatttcccccacttataaacacattgtcaggccatgtcctatccgatataggactcttaaca 54567859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16239630 - 16239557
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    |||||||||||| || | |||| |||||||||| |||||||||||| || |||| ||| |||||||||||||||    
T  16239630 tgtgaggtgaggtttgcccccacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaacac 16239557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45139016 - 45139069
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||| | |||| |||| ||||||||||||||||||||||||||    
T  45139016 tgtgaggtgaggattgcccccacttattaacacgttgtcaggccatctcttatc 45139069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 50083126 - 50083194
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||||||| |||||| ||| |||| |||||    
T  50083126 tgtgaggtgaggatttcccccacttataaacacattgtcgggccatcacttatccgatgtgaggctctt 50083194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 54368555 - 54368482
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||| || |||||||||||  |||| ||| || ||||||||||||    
T  54368555 tgtgaggtgaggattgcccccacttataaacacattttcaggccatcttctatcggatgtgggactcttaacac 54368482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11589824 - 11589752
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| ||||||||||||||    
T  11589824 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaaca 11589752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 35038477 - 35038545
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| | |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||    
T  35038477 aggtgaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 35038545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 30138101 - 30138034
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctta 70  Q
    ||||||||||||| | |||| |||||||||| || |||||||||| | |||| ||||||||| |||||    
T  30138101 tgaggtgaggattgcccccacttataaacacattatcaggccatcacctatccgatatgagattctta 30138034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 30147652 - 30147585
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctta 70  Q
    ||||||||||||| | |||| |||||||||| || |||||||||| | |||| ||||||||| |||||    
T  30147652 tgaggtgaggattgcccccacttataaacacattatcaggccatcacctatccgatatgagattctta 30147585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 4155361 - 4155291
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||| | |||| ||||||||||| |||| |||||| || |||| ||| || |||||||||||    
T  4155361 tgaggtgaggattgcccccacttataaacacgctgtctggccatgtcatatccgatgtgggactcttaaca 4155291  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20303109 - 20303183
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||||| || |||||||||||| || |||| ||| || || ||||||||||    
T  20303109 tgtgaggtgaggattgcccccacttataaatacattgtcaggccatgtcatatccgatgtgggattcttaacaca 20303183  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 20327659 - 20327733
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||||| || |||||||||||| || |||| ||| || || ||||||||||    
T  20327659 tgtgaggtgaggattgcccccacttataaatacattgtcaggccatgtcctatccgatgtgggattcttaacaca 20327733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34610600 - 34610527
Alignment:
Q  1 tgtgaggtgaggatttctccc-atttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | ||| | |||||||||  ||||||||||| ||| | ||||||||| |||||||||||    
T  34610600 tgtgaggtgaggattgccccccacttataaacatattgtcaggccaactcatgtctgatatgggactcttaaca 34610527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45138847 - 45138900
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||| | |||| |||||||||| ||| ||| ||||||||||||    
T  45138847 tgtgaggtgaggattgcccccacttataaacacattgccagaccatctcttatc 45138900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2806331 - 2806399
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| | |||| |||||||||| |   | |||||||| ||||| ||||||||||||||    
T  2806331 tgtgaggtgaggattccacccacttataaacacatgtaccggccatcttttatccgatatgagactctt 2806399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16926994 - 16927066
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||| |||||||| | |||| |||||||||| |||||||||||| |  |||| ||| || |||||||||||    
T  16926994 tgtgagatgaggattacccccacttataaacacattgtcaggccatgttctatccgatgtgggactcttaaca 16927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20327894 - 20327966
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||    
T  20327894 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 20327966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23708269 - 23708345
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaa 77  Q
    ||||||||||||||| | |||| |||||||||  ||||||| | | ||| || ||||| || |||||||||||||||    
T  23708269 tgtgaggtgaggattgcccccacttataaacaaattgtcagactaactcctaactgatgtgggactcttaacacaaa 23708345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23726725 - 23726801
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaa 77  Q
    ||||||||||||||| | |||| |||||||||  ||||||| | | ||| || ||||| || |||||||||||||||    
T  23726725 tgtgaggtgaggattgcccccacttataaacaaattgtcagactaactcctaactgatgtgggactcttaacacaaa 23726801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 23745181 - 23745257
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaaa 77  Q
    ||||||||||||||| | |||| |||||||||  ||||||| | | ||| || ||||| || |||||||||||||||    
T  23745181 tgtgaggtgaggattgcccccacttataaacaaattgtcagactaactcctaactgatgtgggactcttaacacaaa 23745257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 39620347 - 39620291
Alignment:
Q  19 cccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||| |||||||||| |||||||| |||| | |||| ||| ||||||||||||||||    
T  39620347 cccacttataaacacattgtcaggtcatcacctatccgatgtgagactcttaacaca 39620291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36277271 - 36277344
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| |||| || ||| |||||||||||||||    
T  36277271 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcttgtccgatgtgagactcttaacac 36277344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3393021 - 3392948
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||| ||||  |||| |||||||||| ||||||||||||| | |||| ||| |||||||||||||||    
T  3393021 tgtgaggtgagaattttccccacttataaacacattgtcaggccatcacctatccgatgtgagactcttaacac 3392948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 21054998 - 21055070
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||||| | |||| |||||| |||||||||||    
T  21054998 tgtgaggtgaggattgcccccacttataaacatattgtcaggccatcacctatccgatatgggactcttaaca 21055070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47710482 - 47710410
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| |||| |||||||| | |||| ||| ||||||||||||||    
T  47710482 tgtgaggtgaggattgcccccacttataaacacattgtaaggccatcacctatccgatgtgagactcttaaca 47710410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47722138 - 47722066
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| |||| |||||||| | |||| ||| ||||||||||||||    
T  47722138 tgtgaggtgaggattgcccccacttataaacacattgtaaggccatcacctatccgatgtgagactcttaaca 47722066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44874391 - 44874462
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaac 72  Q
    ||||||||||||||||| |||| |||||||||| ||||||||  ||||| |||| ||| || ||||||||||    
T  44874391 tgtgaggtgaggatttcccccacttataaacacattgtcaggttatctcctatccgatgtgggactcttaac 44874462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31485469 - 31485543
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||| ||||||||| | |||| |||||||||| ||||||||||||| | ||||| || || |||||||||||||    
T  31485469 tgtgatgtgaggattgcccccacttataaacacattgtcaggccatcacatatcttatgtgggactcttaacaca 31485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 28080681 - 28080632
Alignment:
Q  24 ttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||| |||||||| ||||||||||| ||| ||||||||||||||    
T  28080681 ttataaacacattgtcaggtcatctcttatccgatgtgagactcttaaca 28080632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 3519776 - 3519844
Alignment:
Q  7 gtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||| | |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||||    
T  3519776 gtgaggattacccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaacaca 3519844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 23839122 - 23839190
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||||| |||| |||||||||  |||| || |||||||||||| | | ||||||||||    
T  23839122 tgtgaggtgaggatttcccccacttataaacagattgttagaccatctcttatccgttgtgagactctt 23839190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48661600 - 48661672
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | ||||  |||||| || |||||||| |||||| |||||||| || |||||||||||    
T  48661600 tgtgaggtgaggattgcccccacctataaatacattgtcaggtcatctcctatctgatgtgggactcttaaca 48661672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 6634892 - 6634821
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| |||||||||||||||    
T  6634892 tgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaacac 6634821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 26562118 - 26562193
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacacaa 76  Q
    |||||||||| |||| | |||| |||||||||  ||||||||||| ||| || | ||| |||||||||||||||||    
T  26562118 tgtgaggtgaagattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgagactcttaacacaa 26562193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 43688207 - 43688278
Alignment:
Q  4 gaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||| |||||| | |||| |||||||||| |||||||||||| || |||| ||| || |||||||||||||    
T  43688207 gaggtaaggattgcccccacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaacaca 43688278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48243106 - 48243178
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| ||||||| |||  || |||||||| || |||||||||||||    
T  48243106 tgtgaggtgaggattgcccccacttataaacacattgtcagacca--tcatatctgatgtgggactcttaacaca 48243178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 26239961 - 26240035
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| ||||||| |||| || |||| ||| |  |||||||||||||    
T  26239961 tgtgaggtgaggattgcccccacttataaacacattgtcagaccatgtcctatccgatgtcggactcttaacaca 26240035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 29469875 - 29469805
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||||    
T  29469875 aggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacaca 29469805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43075355 - 43075428
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctctta-tctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||||||||||||||| | ||||| | | || ||| ||||||||||||||    
T  43075355 tgtgaggtgaggattgcccccacttataaacacgttgtcatgtcatctttcattccgatgtgagactcttaaca 43075428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43085582 - 43085655
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctctta-tctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||||||||||||||| | ||||| | | || ||| ||||||||||||||    
T  43085582 tgtgaggtgaggattgcccccacttataaacacgttgtcatgtcatctttcattccgatgtgagactcttaaca 43085655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43089253 - 43089326
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctctta-tctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||||||||||||||| | ||||| | | || ||| ||||||||||||||    
T  43089253 tgtgaggtgaggattgcccccacttataaacacgttgtcatgtcatctttcattccgatgtgagactcttaaca 43089326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 4268091 - 4268019
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||| |||| | |||| |||||||||  ||||||||||| ||| || ||||| || |||||||||||||    
T  4268091 tgaggtgatgattgcccccacttataaacaaattgtcaggccaactcctaactgatgtgggactcttaacaca 4268019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 5522918 - 5522846
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||| |||| |||||| ||| |||||| ||||||| ||| |||||||  ||| || |||||||||||    
T  5522918 tgtgaggtgaagattgctcccacttaaaaacacattgtcagaccaactcttatacgatgtgggactcttaaca 5522846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 6001482 - 6001554
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||| | |||| |||||||||  |||||||| |||||  |||| ||| || |||||||||||||    
T  6001482 tgaggtgaggattgcccccacttataaacatattgtcaggtcatcttctatccgatgtgggactcttaacaca 6001554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9689135 - 9689207
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||||| |||| |||||| ||| ||||||  ||||| | |||| ||| || |||||||||||    
T  9689135 tgtgaggtgaggatttcccccacttataagcacattgtcaaaccatcacctatccgatgtgggactcttaaca 9689207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 29469640 - 29469572
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||    
T  29469640 aggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 29469572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32879659 - 32879711
Alignment:
Q  1 tgtgaggtgaggatttctccc-atttataaacacgttgtcaggccatctctta 52  Q
    ||||||||||||||| | ||| | |||||||||| ||||||||||||||||||    
T  32879659 tgtgaggtgaggattgccccccacttataaacacattgtcaggccatctctta 32879711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42985168 - 42985240
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| |  ||| |||||||||| ||||||  ||||| | |||| ||| ||||||||||||||    
T  42985168 tgtgaggtgaggattgcctccacttataaacacattgtcaaaccatcacatatccgatgtgagactcttaaca 42985240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42586484 - 42586555
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||| |||| |||||||||||||||||||| ||| ||||||||||||||    
T  42586484 tgtgaggtgaggattgc-cccacttatatacacattgtcaggccatctcttatccgatgtgagactcttaaca 42586555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 39348397 - 39348454
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgat 58  Q
    ||||||||||||||| | |||| ||||||||||||||||| |||||||| ||||||||    
T  39348397 tgtgaggtgaggattgcccccacttataaacacgttgtcaagccatctcctatctgat 39348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 35772301 - 35772229
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||| |||||| | |||| |||||||||| ||||||||||||||| |||| ||| || |||||||||||||    
T  35772301 tgaggtaaggattgcccccacttataaacacattgtcaggccatctcctatccgatgtgggactcttaacaca 35772229  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25145530 - 25145604
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| | |||||||| ||||||| ||||| | |||| ||| ||||||||||||||||    
T  25145530 tgtgaggtgaggattgcccccactaataaacacattgtcagaccatcacctatccgatgtgagactcttaacaca 25145604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17452724 - 17452781
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgat 58  Q
    ||||||||||||||| | |||| ||||||| || |||||||||||| |||||||||||    
T  17452724 tgtgaggtgaggattgcccccacttataaatacattgtcaggccatgtcttatctgat 17452781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2859672 - 2859744
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| | |||||||| ||||||| ||||| | |||| ||| ||||||||||||||    
T  2859672 tgtgaggtgaggattacccccactaataaacacattgtcagaccatcacctatccgatgtgagactcttaaca 2859744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 15986378 - 15986450
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||||||||| ||||| |||| ||| |  |||||||||||    
T  15986378 tgtgaggtgaggattgcccccacttataaacacattgtcaggctatctcctatccgatgtaggactcttaaca 15986450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17452873 - 17452945
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||| |||| | |||| ||||||| || |||||||||||| ||||||| ||| || |||||||||||    
T  17452873 tgtgaggtgaagattgcccccacttataaatacattgtcaggccatgtcttatccgatgtgggactcttaaca 17452945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 26173505 - 26173573
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||| ||| | |||| |||||||||| ||||||| ||||||| |||||||| || |||||||||||    
T  26173505 aggtgagaattgcccccacttataaacacattgtcagaccatctcatatctgatgtgggactcttaaca 26173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 26177180 - 26177108
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||| | |||| ||||||||||||||||||| ||| || | || ||| || |||||||||||||    
T  26177180 tgaggtgaggattgcccccacttataaacacgttgtcaggtcatgtcctgtccgatgtgggactcttaacaca 26177108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 38080643 - 38080572
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||||||  ||| ||| || |||||||||||    
T  38080643 tgtgaggtgaggattgc-cccaattataaacacattgtcaggccatctcccatccgatgtgggactcttaaca 38080572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 52650816 - 52650888
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||||| ||||||||| |||| ||| || ||||| |||||    
T  52650816 tgtgaggtgaggattgcccccacttataaacacattgtccggccatctcctatccgatgtgggactcctaaca 52650888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4112815 - 4112890
Alignment:
Q  1 tgtgaggtgaggatttctccc-atttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||||| ||| | |||||||||| |||||||||||| ||  ||| ||| || |||||||||||||    
T  4112815 tgtgaggtgaggatttccccccacttataaacacattgtcaggccatgtcccatccgatgtgggactcttaacaca 4112890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 20208573 - 20208643
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||| | |||| |||||||||| ||||||| |||| || |||| ||| || |||||||||||    
T  20208573 tgaggtgaggattgcccccacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaaca 20208643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 21626402 - 21626452
Alignment:
Q  19 cccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    |||| |||||||||  |||||||||||||||||||||||| || |||||||    
T  21626402 cccacttataaacatattgtcaggccatctcttatctgatgtgggactctt 21626452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 35892330 - 35892256
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| ||| | |||| ||||||| || ||||||| ||||||  |||||||| || |||||||||||||    
T  35892330 tgtgaggtgagtattgcccccacttataaatacattgtcagaccatcttatatctgatgtgggactcttaacaca 35892256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 51459879 - 51459949
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| |||| |||||||| | |||| ||| || |||||||||||||    
T  51459879 aggtgaggattgcccccacttataaacacattgttaggccatcacctatccgatgtgggactcttaacaca 51459949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2859437 - 2859506
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctta 70  Q
    |||||||| |||||| | |||| |||||||||| ||||||||||||| | |||| ||| || ||||||||    
T  2859437 tgtgaggtaaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgggactctta 2859506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4113051 - 4113096
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccat 46  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||    
T  4113051 tgtgaggtgaggattgcccccacttataaacacattgtcaggccat 4113096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 25145765 - 25145838
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| | ||||| || |||||||| |||| | |||| ||| |||||||||||||||    
T  25145765 tgtgaggtgaggattgcccccactaataaatacattgtcaggtcatcacctatccgatgtgagactcttaacac 25145838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 25713432 - 25713359
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    |||||||||| |||| | |||| |||||||||| ||||||| ||||| | |||| ||| || ||||||||||||    
T  25713432 tgtgaggtgacgattgcccccacttataaacacattgtcagaccatcacctatccgatgtgggactcttaacac 25713359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31181558 - 31181611
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||| | |||| |||||||||| |  |||||||||||||||||    
T  31181558 tgtgaggtgaggattgcccccacttataaacacatgttcaggccatctcttatc 31181611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40079191 - 40079138
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||| | |||| |||||||||| |||||||| |||||| ||||    
T  40079191 tgtgaggtgaggattgcccccacttataaacacattgtcaggtcatctcctatc 40079138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 41035872 - 41035944
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||| |||||||| || |||| ||  ||||||||||||||    
T  41035872 tgtgaggtgaggattgcccccacttataaacatattggcaggccatgtcctatccgacgtgagactcttaaca 41035944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 52961619 - 52961547
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||| | | || |||||||||| ||||||| ||||||| |||| ||| || ||| |||||||||    
T  52961619 tgaggtgaggattgccctcacttataaacacattgtcagaccatctcctatccgatgtgggacacttaacaca 52961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 5931994 - 5932068
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| |  |||||||| || |||||||||||||    
T  5931994 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtactatctgatgtgggactcttaacaca 5932068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 39052586 - 39052656
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| ||||||||||||| | |||||||| || |||||||||||||    
T  39052586 aggtgaggattgcccccacttataaacacattgtcaggccatcacctatctgatgtgggactcttaacaca 39052656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34236693 - 34236746
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||    
T  34236693 tgtgaggtgaggattgctcccacttataaacacattgtcagaccatctcttatc 34236746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38447472 - 38447525
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||||||||||    
T  38447472 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatctcttatc 38447525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 3961444 - 3961512
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||  ||| ||||||||||||||||| |||||||  ||||||||||||||| || |||||||    
T  3961444 tgtgaggtgataattgctcccatttataaacacattgtcagctcatctcttatctgatgtgggactctt 3961512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 7729980 - 7729912
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||| | |||| |||||||||| | ||||||||||||| |||||||| || |||||||    
T  7729980 tgtgaggtgaggattgcccccacttataaacacatggtcaggccatctcatatctgatgtgggactctt 7729912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24532466 - 24532538
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||| |||| | |||| |||||||||| ||||||||||||||| |||| ||| || |||||||||||    
T  24532466 tgtgaggtgatgattgcccccacttataaacacattgtcaggccatctcctatccgatgtgggactcttaaca 24532538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39052974 - 39053046
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||||||||||||| | |||| ||| || |||||||||||    
T  39052974 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 39053046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 10450037 - 10449967
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||| | | || |||||||||| |||||||||||| || |||| ||| ||||||||||||||    
T  10450037 tgaggtgaggattgcccacacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaaca 10449967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28069402 - 28069476
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||||| || |||||||||||| || |||| ||| || |||||||||||||    
T  28069402 tgtgaggtgaggattgcccccacttataaatacattgtcaggccatgtcatatccgatgtgggactcttaacaca 28069476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22638224 - 22638292
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    |||| |||||||||| | || | |||||||||| ||| |||||||||||||||| ||| ||||||||||    
T  22638224 tgtgtggtgaggattgcccctacttataaacactttgacaggccatctcttatccgatgtgagactctt 22638292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36917484 - 36917556
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||| ||||||||| | |||| ||||||| || ||||||||||||  | |||||||| ||||||||||||||    
T  36917484 tgtgatgtgaggattacccccacttataaatacattgtcaggccattacctatctgatgtgagactcttaaca 36917556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38476316 - 38476248
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    ||||||||||||||||| |||| |||||||||| |  ||||||||||||| | ||||| || |||||||    
T  38476316 tgtgaggtgaggatttcccccacttataaacacttattcaggccatctctcaactgatgtgggactctt 38476248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 15042718 - 15042789
Alignment:
Q  4 gaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||| |||| | |||| |||||||||| |||||||||||| || |||| ||| || |||||||||||||    
T  15042718 gaggtgatgattgcccccacttataaacacattgtcaggccatgtcgtatccgatgtgggactcttaacaca 15042789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 29006125 - 29006062
Alignment:
Q  6 ggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    |||||||||||| | ||||||||||||| |||||| | |||||| ||||| || ||||||||||    
T  29006125 ggtgaggatttccctcatttataaacacattgtcatgtcatctcatatctaatgtgagactctt 29006062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 11232243 - 11232313
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||||    
T  11232243 aggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacaca 11232313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17477104 - 17477030
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||||    
T  17477104 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacaca 17477030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19256631 - 19256705
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||||    
T  19256631 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacaca 19256705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31197886 - 31197813
Alignment:
Q  1 tgtgaggtgaggatt-tctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| ||||| | ||| |||||| ||||||||||||| | |||||||| || ||||||||||||    
T  31197886 tgtgaggtgaggattgtctcc-acttacaaacacattgtcaggccatcacctatctgatgtgggactcttaacac 31197813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 34842715 - 34842645
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||| | |||| |||||||||  ||||||||||| ||| || ||||| || |||||||||||    
T  34842715 tgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaactgatgtgggactcttaaca 34842645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8466533 - 8466586
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||||||||||| |||| |||||||||| |  |||| ||||||||||||    
T  8466533 tgtgaggtgaggatttcccccacttataaacacttgttcagaccatctcttatc 8466586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8929056 - 8929003
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    ||||||||| ||||| | |||| |||||||||| ||||||||||||||| ||||    
T  8929056 tgtgaggtgcggattgcccccagttataaacacattgtcaggccatctcatatc 8929003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 5940097 - 5940029
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    |||||||||||||||   ||||||||||||||| ||||||  |||||||| ||| ||| || |||||||    
T  5940097 tgtgaggtgaggattgtccccatttataaacacattgtcaaaccatctctcatccgatgtgggactctt 5940029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17469857 - 17469785
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||    
T  17469857 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 17469785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 18004146 - 18004214
Alignment:
Q  6 ggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    |||||||||| | |||| |||||||||  |||||||||||| || | |||||| || ||||||||||||    
T  18004146 ggtgaggattgcccccacttataaacatattgtcaggccatgtcctgtctgatgtgggactcttaacac 18004214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19256865 - 19256937
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||    
T  19256865 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 19256937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 25325685 - 25325613
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||| ||||||| | |||| |||||||||| |||| ||||||| || |||| ||| || |||||||||||    
T  25325685 tgtgaggagaggattgcacccacttataaacacattgttaggccatgtcctatccgatgtgggactcttaaca 25325613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29907771 - 29907839
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactctt 69  Q
    |||||||||||||||   |||| |||||||||| ||||||| | |||||||||| ||| || |||||||    
T  29907771 tgtgaggtgaggattgaccccacttataaacacattgtcagactatctcttatccgatgtgggactctt 29907839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31961217 - 31961143
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||| |||||| | |||| |||||||||| ||||||||||||| | |||||||| || |||||||||||||    
T  31961217 tgtgaggtaaggattgcccccacttataaacacattgtcaggccatcacatatctgatgtgggactcttaacaca 31961143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4868622 - 4868696
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||||    
T  4868622 tgtgaggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacaca 4868696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 6054442 - 6054368
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||||| || ||||||| |||||||||||| ||| |  |||||||||||||    
T  6054442 tgtgaggtgaggattgcccccacttataaataccttgtcagaccatctcttatccgatgttggactcttaacaca 6054368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6542754 - 6542827
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||| |||| | ||||||||||||||  ||||||| ||||||| |||| ||| ||||||||||||||||    
T  6542754 tgtgaggtgatgattgc-cccatttataaacagattgtcagaccatctcctatccgatgtgagactcttaacaca 6542827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 7638639 - 7638709
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| || ||||| |||||| |||||||  ||||||||||||||||    
T  7638639 aggtgaggattgcccccacttataaacacattatcaggtcatctcctatctgacgtgagactcttaacaca 7638709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 27656497 - 27656424
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||||| |||| |||||||||  ||||||||||| ||| || | ||| || ||||||||||||    
T  27656497 tgtgaggtgaggatttcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacac 27656424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9705059 - 9704987
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||||| |||| | |||| |||||||||| ||||||||| || || |||| ||| ||||||||||||||    
T  9705059 tgtgaggtgatgattgcccccacttataaacacattgtcaggctatgtcctatccgatgtgagactcttaaca 9704987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27653256 - 27653184
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||||| |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||    
T  27653256 tgtgaggtgaggatttcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaaca 27653184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 6542990 - 6543060
Alignment:
Q  3 tgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||| |||| | |||| |||||||||| ||||||| |||||||||||| ||| ||  ||||||||||    
T  6542990 tgaggtgatgattgcccccacttataaacacattgtcagaccatctcttatccgatgtggaactcttaaca 6543060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 9705293 - 9705219
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||| |||| | ||||| || |||| ||| || |||||||||||||    
T  9705293 tgtgaggtgaggattgcccccacttataaacacattgttaagccatgtcctatccgatgtgggactcttaacaca 9705219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17147705 - 17147779
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| ||||||| || |||||||| ||| || |||| ||| || |||||||||||||    
T  17147705 tgtgaggtgaggattgcccccacttataaatacattgtcaggtcatgtcctatccgatgtgggactcttaacaca 17147779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 27772985 - 27772911
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || | ||| || |||||||||||||    
T  27772985 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaaccgatgtgggactcttaacaca 27772911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3680285 - 3680212
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    |||||||||| |||| | |||| |||||||||| ||||||| ||||| | |||| ||| || ||||||||||||    
T  3680285 tgtgaggtgatgattgcccccacttataaacacattgtcagaccatcacatatccgatgtgggactcttaacac 3680212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6400665 - 6400738
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||| ||||||||| |  ||| |||||||||| |||||||||||| || | || ||| |||||||||||||||    
T  6400665 tgtgatgtgaggattgcctccacttataaacacattgtcaggccatgtcatgtccgatgtgagactcttaacac 6400738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19639158 - 19639211
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatc 54  Q
    |||||||||||||||   |||| |||||||||| |||||||||||| |||||||    
T  19639158 tgtgaggtgaggattgtccccacttataaacacattgtcaggccatatcttatc 19639211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4868858 - 4868930
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||| ||| |||||||| || | || ||| || |||||||||||    
T  4868858 tgtgaggtgaggattgcccccacttataaacacattgccaggccatgtcctgtccgatgtgggactcttaaca 4868930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 12199730 - 12199802
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| ||||||| || |||||||| ||| |  ||||||||||| ||| |||||||    
T  12199730 tgtgaggtgaggattacccccacttataaatacattgtcaggtcatgttctatctgatatgggacgcttaaca 12199802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 13353236 - 13353168
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||    
T  13353236 aggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 13353168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33494578 - 33494506
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||||||| | |||| |||||||||  || ||| |||||||| |||| ||| || |||||||||||    
T  33494578 tgtgaggtgaggattgcccccacttataaacatattttcaagccatctcctatccgatgtgggactcttaaca 33494506  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 33796361 - 33796293
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||    
T  33796361 aggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaaca 33796293  T

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Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 82108 - 82041
Alignment:
Q  8 tgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    |||||||||| |||||||||| |||| |||||||||||| || | |||||| || |||||||||||||    
T  82108 tgaggatttcccccatttatatacacattgtcaggccatgtcatgtctgatgtgggactcttaacaca 82041  T

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Target: scaffold0519 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 2186 - 2116
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacaca 75  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||||    
T  2186 aggtgaggattgcccccacttataaacacattgtcaggccatgtcctgtccgatgtgggactcttaacaca 2116  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4474 - 4547
Alignment:
Q  1 tgtgaggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaacac 74  Q
    ||||||||||||||| | |||| |||||||||  ||||||||||| ||| || ||||| ||  |||||||||||    
T  4474 tgtgaggtgaggattgcccccacttataaacaaattgtcaggccaactcctaactgatgtggcactcttaacac 4547  T

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Target: scaffold0092 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 5687 - 5622
Alignment:
Q  8 tgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    |||||||| | |||| |||||||||| |||||| |||||||  |||||||| || |||||||||||    
T  5687 tgaggattacccccacttataaacacattgtcatgccatcttctatctgatgtgggactcttaaca 5622  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 20610 - 20542
Alignment:
Q  5 aggtgaggatttctcccatttataaacacgttgtcaggccatctcttatctgatatgagactcttaaca 73  Q
    ||||||||||| | |||| |||||||||| |||||||||||| || | || ||| || |||||||||||    
T  20610 aggtgaggattgcccccaattataaacacattgtcaggccatatcctgtccgatgtgggactcttaaca 20542  T

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