View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_35 (Length: 276)
Name: NF7765_low_35
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_35 |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 25304230 - 25303991
Alignment:
| Q |
18 |
aggtacaaatggacattggtggtagagtttttaattgttccaagaagttacaaagttggggtagaaggaaaagaatgaggtttaaggataaaatttatca |
117 |
Q |
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| T |
25304230 |
aggtacaaatggacattggtggtagagtttttaattgttccaataagttacaaagttggggtagaaggaaaagaatgaggtttaaggataaaatttatca |
25304131 |
T |
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| Q |
118 |
gcgcaacaagtaattggaggaaatgcataggcaacccgatcgtttgaatacaaatcatttagaagaatatacggagaagtgtgctcggcttgttattcag |
217 |
Q |
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| T |
25304130 |
gcgcaataagttattagaggaaatgcataggcaacctaatcgtgtgaatacaaatcatttagaagaaaatatggagaagtgtgctcggcttgttattcag |
25304031 |
T |
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| Q |
218 |
gaggaggccttttggaaacaaagagctaagatgcactggt |
257 |
Q |
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| T |
25304030 |
gaggaggccttttggaaacaaagagctaagatgcactggt |
25303991 |
T |
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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 14439 - 14503
Alignment:
| Q |
40 |
tagagtttttaattgttccaagaagttacaaagttggggtagaaggaaaagaatgaggtttaagg |
104 |
Q |
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| T |
14439 |
tagagttgtgaattgttctacgaagttgcaaagttggggtagaaggaagagagttcggtttaagg |
14503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 24602373 - 24602445
Alignment:
| Q |
33 |
ttggtggtagagtttttaattgttccaagaagttacaaagttggggtagaaggaaaagaatgaggtttaagga |
105 |
Q |
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| T |
24602373 |
ttggtgatagagtgttaaattgttctacgaagtttcaaagttggggtaggaggaagagagttcggtttaagga |
24602445 |
T |
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