View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_36 (Length: 259)
Name: NF7765_low_36
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3192539 - 3192785
Alignment:
| Q |
1 |
agaaaaatcattagtatttggtaaaatgaatgtaggccccaccatttaatgtggggtccattttcaaaatggtggtcccttttcccgaaatggtggaacc |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3192539 |
agaaaaatgattagtatttggtaaaatgaatgtaggccccaccatttaatgtgaggtccattttcaaaatggtggtcccttttcccgaaatggtggaacc |
3192638 |
T |
|
| Q |
101 |
cacgtacatttcacccaacaagagggtgagtg-----aagtgtgttcgagtgagtgttgcttgcactactcataggaaaataaaggtacaaagaatgaac |
195 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3192639 |
cacgtacatttcacccaacaagagggtgagtgttgaaaagtgtgttcgagtgagtgttgcttgcactactcataggaaaataaaggtacatagaatgaac |
3192738 |
T |
|
| Q |
196 |
aaacattagatactccgtgccattgcatatataattatgaacaatac |
242 |
Q |
| |
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|||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
3192739 |
aaacattatatactccatgccattgcatatataattatgaacaatac |
3192785 |
T |
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