View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_37 (Length: 258)
Name: NF7765_low_37
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_37 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 26342279 - 26342042
Alignment:
| Q |
21 |
tgtgtggtccgccagataatggtctgaaacgaccaaccagttaagaaaaagtttttcatgccagaccatgcctgaatgattacaaaatggacgatttaac |
120 |
Q |
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| T |
26342279 |
tgtgtggtccaccagataatggtctgaaacgaccaaccagttcagaaaaagtttttcatgccaaaccatgcctgaaggattacaaaatggacgatttaac |
26342180 |
T |
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| Q |
121 |
tgttaaaatttgatgtgtggtatgaatccaaaagccccttaaggctctggttctggcagacatcgtgacaatgatggaatccgaaaaaccataatcattc |
220 |
Q |
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| T |
26342179 |
tgtcaaaatttgatgtgttgtatgaatccaaaaggtccttaaggctctggttctggcagacatcgtgacaacgatgacatctgaaaaaccataatcattc |
26342080 |
T |
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| Q |
221 |
catcgatggattgtgtacatcaagtcaaggggtgtggg |
258 |
Q |
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| T |
26342079 |
catcgatagattgtgtacatcgagtcaaggggtgtggg |
26342042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 26348946 - 26348740
Alignment:
| Q |
32 |
ccagataatggtctgaaacgaccaaccagttaagaaaaagtttttcatgccagaccatgcctgaatgattacaaaatggacgatttaactgttaaaattt |
131 |
Q |
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| T |
26348946 |
ccagataatggtctgaaccgaccaagcacttaggaaaaagtttttaaggccagaccatgcccgaaggattacaaaatggacgatctaactatcagaattt |
26348847 |
T |
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| Q |
132 |
gatgtgtggtatgaat-ccaaaagccccttaaggctctggttctggcagacatcgtgacaatgatggaatccgaaaaaccataatcattccatcgatgga |
230 |
Q |
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| T |
26348846 |
gatgtgtggaatgaatcccaaaaggcccttcaggttctggtcctggcagacatcctgacaa-aacgacatccggaaaaccataatcattacatcgatgga |
26348748 |
T |
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| Q |
231 |
ttgtgtac |
238 |
Q |
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| T |
26348747 |
atgtgtac |
26348740 |
T |
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