View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_39 (Length: 245)
Name: NF7765_low_39
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 6344011 - 6344110
Alignment:
| Q |
130 |
tgtgatatttgttgtggcaaattaaataacttttgccacgactgtcatacatataaaaaggggttgattcgatctgagggctggatactaatgtatatgt |
229 |
Q |
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| T |
6344011 |
tgtgatatttgttgtggcaaattaaataacttttgccacgactgtcatacatataaaaaggggttgattcgatctgagggctggatactaatgtatatgt |
6344110 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 6343941 - 6343985
Alignment:
| Q |
13 |
aatatctggttgggaggggagaacccactttgtatactccacata |
57 |
Q |
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| T |
6343941 |
aatatctggttggaaggggagaatccactttgtgtactccacata |
6343985 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 42563778 - 42563715
Alignment:
| Q |
52 |
cacatattctcggatggagattaatcactattaaacgaccataaaaacttcgtatcaatatcat |
115 |
Q |
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| T |
42563778 |
cacaaattctctgatgaagattaatcactgttaaacgagggtaaaaactttgtatcaatatcat |
42563715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 35932292 - 35932240
Alignment:
| Q |
71 |
attaatcactattaaacgaccataaaaacttcgtatcaatatcatgttaacta |
123 |
Q |
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| T |
35932292 |
attaatcactattaaataacgatgaaaacttcatatcaatatcatggtaacta |
35932240 |
T |
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