View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_4 (Length: 739)
Name: NF7765_low_4
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 10 - 721
Target Start/End: Original strand, 31717805 - 31718515
Alignment:
| Q |
10 |
gagatggacatctggtatcctatttgggacgaagtgttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagata |
109 |
Q |
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| T |
31717805 |
gagacggacaactggtatcctatttgggacgaagtgttcaaatcccgtttgagtgatccggagctcgctttgctccggatcgcagtgaaggataaagata |
31717904 |
T |
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| Q |
110 |
aggcatcagatgagacaagaattttggtttgttgctttgtgcgacagaaagggaaagaaatataattc----tgtcaagcttttgcttcttttccaactt |
205 |
Q |
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| T |
31717905 |
aggcatcagatgagacaaggattttggtttgttgctttgtgcgacagaaagggaaagaaatataattaattatgtcaagcttttgcttcttttccaactt |
31718004 |
T |
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| Q |
206 |
gaatcttcaaatatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctagaagcatct-tatctaaaaggtcattgcaagatgaag |
304 |
Q |
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| T |
31718005 |
gaatattcaaatatattgtagtaggtatcattaatctaaatatatacaaggttttcctttctagaagcatctgtatctaaaaggtcattgcaagatgaag |
31718104 |
T |
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| Q |
305 |
aagcttgggggaaaagaagttcttagtttgagaggtgat-ccaaggtctgatactaactcaatggtgtttattataaattgcaatgagtatattattggc |
403 |
Q |
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| T |
31718105 |
aaacttgggggaaaagaagtttttagtttgagaggtgattccaaggtctgatactaactcaatggtgtttattataaattgcaatgagtatatt---ggc |
31718201 |
T |
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| Q |
404 |
tgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaaattcgtgt |
503 |
Q |
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| T |
31718202 |
tgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaaattcgtgt |
31718301 |
T |
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| Q |
504 |
caagatgcatcagatgaatgccttaaaagtgaatcgatcgatttccatgtgcctagccaccctcagtatgatattgaacttcaataactctttggtttgg |
603 |
Q |
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| T |
31718302 |
caatatgcatcagatgaatgccttaagagtgaatcg----atttccatgtgcctagccacccccagtatgatattgaacttcaataactctttggtttgg |
31718397 |
T |
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| Q |
604 |
aaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatcaatactagacagtccttgact |
703 |
Q |
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| T |
31718398 |
aaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatgaatactagacagtccttgact |
31718497 |
T |
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| Q |
704 |
acaattgacatgatgtgt |
721 |
Q |
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| T |
31718498 |
acaattgacatgatgtgt |
31718515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 31654383 - 31654479
Alignment:
| Q |
130 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagcttttgcttcttttccaacttgaatcttcaaatatattgtag |
226 |
Q |
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| T |
31654383 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagcttttacttggattccaccttgaaactttaaatatattgtag |
31654479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 31654226 - 31654334
Alignment:
| Q |
11 |
agatggacatctggtatcctatttgggacgaagtgttcaaatcccatttgagtgatccggagctggctttgctccgggtcgcagtgaaggataaagataa |
110 |
Q |
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| T |
31654226 |
agatggacaattggtatcctgtttgggacgaagagttcgaattccaattgactgttccagagcttgcattgctccggatcgaagtgaaagataaagataa |
31654325 |
T |
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| Q |
111 |
ggcatcaga |
119 |
Q |
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| T |
31654326 |
gggatcaga |
31654334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 31704751 - 31704810
Alignment:
| Q |
130 |
attttggtttgttgctttgtgcgacagaaagggaaagaaatataattctgtcaagctttt |
189 |
Q |
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| T |
31704751 |
atttcggtctgttgctttgtgtgacagaaagggaaagaaatataactctgtcaagctttt |
31704810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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