View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_41 (Length: 238)
Name: NF7765_low_41
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 33135740 - 33135537
Alignment:
| Q |
15 |
attttcaaacactaagttaggtnnnnnnntaaacattaatgagctgtcactaatttcaaccaatgactctcatggcttcaccaactaaatattcactgcc |
114 |
Q |
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| T |
33135740 |
attttcaaacactaagttaggtaaaaaaataaacattaatgagttgtcactaatttcaaccaatgactctcatggcttcaccaactaaatattcactgcc |
33135641 |
T |
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| Q |
115 |
ccaaaatatataaatacatggttccatttctctttttgcattgagccaacccccaataacaactttaatcaacannnnnnnaagacttatcgagtttctt |
214 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
33135640 |
ccaaaatatataaatatatggttccatttctctttttgcattgatccaa-ccccaataacaactttaatcaacatttttttaaggcttatcgagtttctt |
33135542 |
T |
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| Q |
215 |
tgatc |
219 |
Q |
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||||| |
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| T |
33135541 |
tgatc |
33135537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 40029665 - 40029584
Alignment:
| Q |
49 |
attaatgagctgtcactaatttcaaccaatgactctcatggcttcaccaactaaatattcactgccccaaaatatataaata |
130 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||||| | | |||||||||||||||||| |
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| T |
40029665 |
attaatgagttgtcactaatttcaaccaatgattctcatggctttgccaaccaaatattgaataccccaaaatatataaata |
40029584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 32354155 - 32354232
Alignment:
| Q |
53 |
atgagctgtcactaatttcaaccaatgactctcatggcttcaccaactaaatattcactgccccaaaatatataaata |
130 |
Q |
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||||| |||| |||||||||||||||| |||||||||||| ||||| ||||| ||||| |||||| |||||||||| |
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| T |
32354155 |
atgagttgtccctaatttcaaccaatggctctcatggctttgccaaccaaatactcactcccccaatttatataaata |
32354232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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