View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_low_42 (Length: 238)

Name: NF7765_low_42
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_low_42
NF7765_low_42
[»] chr3 (10 HSPs)
chr3 (23-227)||(11157477-11157681)
chr3 (23-220)||(8863701-8863898)
chr3 (27-227)||(11146315-11146515)
chr3 (19-196)||(11128482-11128659)
chr3 (23-227)||(10891714-10891918)
chr3 (75-128)||(13173532-13173585)
chr3 (75-128)||(13335408-13335461)
chr3 (95-129)||(11244055-11244089)
chr3 (75-128)||(13163484-13163537)
chr3 (95-128)||(13346605-13346638)
[»] scaffold0002 (2 HSPs)
scaffold0002 (75-128)||(133403-133456)
scaffold0002 (75-128)||(143451-143504)
[»] chr6 (1 HSPs)
chr6 (94-128)||(31677253-31677287)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 23 - 227
Target Start/End: Original strand, 11157477 - 11157681
Alignment:
Q  23 catccgttgaggtagtgatataagggccttacaggaatatacactaagtttatggagggttgaggtgtgatgggaagaactttctgaaataaaaatggat 122  Q
    |||||||||||||||||||||||||||||||||||||  |||  ||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  11157477 catccgttgaggtagtgatataagggccttacaggaacgtacgttaagttcttggagggttgaggagtgataggaagaactttctgaaataaaaatggat 11157576  T
Q  123 tccagaccagtacaaccattaatgaaaagctcttggagcttaggaaaaccatccagtgggaaggaggaaagtgagccacagctactgtctaaaatcaact 222  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||    
T  11157577 tccagaccagtacaaccatcaatgtaaagctcttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacagctgctgactaaagtcaact 11157676  T
Q  223 ccaaa 227  Q
    |||||    
T  11157677 ccaaa 11157681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 8863898 - 8863701
Alignment:
Q  23 catccgttgaggtagtgatataagggccttacaggaatatacactaagtttatggagggttgaggtgtgatgggaagaactttctgaaataaaaatggat 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  8863898 catccgttgaggtagtgatataagggccttgcaggaatatacactaaggctttggagggttgaggggtgatcggaagaactttctgaaataaaaatggat 8863799  T
Q  123 tccagaccagtacaaccattaatgaaaagctcttggagcttaggaaaaccatccagtgggaaggaggaaagtgagccacagctactgtctaaaatcaa 220  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||| ||||    
T  8863798 tccagaccagtacaaccatcaatgacaagctcttggagcttaggaaaaccattcaatgggaaggaggaaagtgagccacagcttctttctaaagtcaa 8863701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 227
Target Start/End: Original strand, 11146315 - 11146515
Alignment:
Q  27 cgttgaggtagtgatataagggccttacaggaatatacactaagtttatggagggttgaggtgtgatgggaagaactttctgaaataaaaatggattcca 126  Q
    |||||||||||||||||||||||||||||||||  |||   |||||  ||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11146315 cgttgaggtagtgatataagggccttacaggaacttacgtgaagttcttggagggttgaggagtgataggaagaactttctgaaataaaaatggattcca 11146414  T
Q  127 gaccagtacaaccattaatgaaaagctcttggagcttaggaaaaccatccagtgggaaggaggaaagtgagccacagctactgtctaaaatcaactccaa 226  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  11146415 gaccagtacaaccatcaatgacaagcttttggagcttaggaaaaccatccaatgggaaggaggaaagtgagccacagctgctgagtaaactcaactccaa 11146514  T
Q  227 a 227  Q
    |    
T  11146515 a 11146515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 11128482 - 11128659
Alignment:
Q  19 tgttcatccgttgaggtagtgatataagggccttacaggaatatacactaagtttatggagggttgaggtgtgatgggaagaactttctgaaataaaaat 118  Q
    |||||||||||||||||||||||||||||||||| || |||| || | ||||||| |||||| |||||| ||||||||||||||||||||||||||| ||    
T  11128482 tgttcatccgttgaggtagtgatataagggccttgcatgaatttaaaataagtttttggaggtttgaggggtgatgggaagaactttctgaaataaagat 11128581  T
Q  119 ggattccagaccagtacaaccattaatgaaaagctcttggagcttaggaaaaccatccagtgggaaggaggaaagtga 196  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || ||| || |||||||||||    
T  11128582 ggattccagacaagtacaacgattaatgaaaagctcttggagcttaggaaaaccattcaatggaaaagaggaaagtga 11128659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 227
Target Start/End: Complemental strand, 10891918 - 10891714
Alignment:
Q  23 catccgttgaggtagtgatataagggccttacaggaatatacactaagtttatggagggttgaggtgtgatgggaagaactttctgaaataaaaatggat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| ||||| ||||||| ||||||||||||||||||||    
T  10891918 catccgttgaggtagtgatataagggccttacaggaatatacaccaaggttttggagggttgaggggtgatcggaagaaatttctgaaataaaaatggat 10891819  T
Q  123 tccagaccagtacaaccattaatgaaaagctcttggagcttaggaaaaccatccagtgggaaggaggaaagtgagccacagctactgtctaaaatcaact 222  Q
    ||||||||  ||||||| | ||||  ||||  ||||||||||||||||||||  | |||||||||||||||||||||||||||||  | |||  ||||||    
T  10891818 tccagaccgctacaaccttcaatgtgaagcagttggagcttaggaaaaccatttaatgggaaggaggaaagtgagccacagctaccatttaatttcaact 10891719  T
Q  223 ccaaa 227  Q
    |||||    
T  10891718 ccaaa 10891714  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 13173585 - 13173532
Alignment:
Q  75 tggagggttgaggtgtgatgggaagaactttctgaaataaaaatggattccaga 128  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  13173585 tggagggttgacgggagatgggaagaactttctgaaataaaaatggattccaga 13173532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 13335461 - 13335408
Alignment:
Q  75 tggagggttgaggtgtgatgggaagaactttctgaaataaaaatggattccaga 128  Q
    ||||||||||| | | ||||||||||| ||| ||||||||||||||||||||||    
T  13335461 tggagggttgacgggagatgggaagaattttttgaaataaaaatggattccaga 13335408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 11244055 - 11244089
Alignment:
Q  95 ggaagaactttctgaaataaaaatggattccagac 129  Q
    ||||||| |||||||||||||||||||||||||||    
T  11244055 ggaagaagtttctgaaataaaaatggattccagac 11244089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 13163537 - 13163484
Alignment:
Q  75 tggagggttgaggtgtgatgggaagaactttctgaaataaaaatggattccaga 128  Q
    ||||||||||| | | ||||||||||| ||| || |||||||||||||||||||    
T  13163537 tggagggttgacgggagatgggaagaattttttgtaataaaaatggattccaga 13163484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 13346638 - 13346605
Alignment:
Q  95 ggaagaactttctgaaataaaaatggattccaga 128  Q
    |||||||||||| |||||||||||||||||||||    
T  13346638 ggaagaactttcagaaataaaaatggattccaga 13346605  T

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Target: scaffold0002 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 133403 - 133456
Alignment:
Q  75 tggagggttgaggtgtgatgggaagaactttctgaaataaaaatggattccaga 128  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||||    
T  133403 tggagggttgacgggagatgggaagaactttctgaaataaaaatggattccaga 133456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 143451 - 143504
Alignment:
Q  75 tggagggttgaggtgtgatgggaagaactttctgaaataaaaatggattccaga 128  Q
    ||||||||||| | | ||||||||||| ||| || |||||||||||||||||||    
T  143451 tggagggttgacgggagatgggaagaattttttgtaataaaaatggattccaga 143504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 128
Target Start/End: Original strand, 31677253 - 31677287
Alignment:
Q  94 gggaagaactttctgaaataaaaatggattccaga 128  Q
    |||||||||| ||||||||||||||||||||||||    
T  31677253 gggaagaactatctgaaataaaaatggattccaga 31677287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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