View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_44 (Length: 233)
Name: NF7765_low_44
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 51856461 - 51856680
Alignment:
| Q |
1 |
caaaataacagtaatagttaacattacattgaactttgagactgattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttacc |
100 |
Q |
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| T |
51856461 |
caaaataacagtaatagttaacattacattgaactttgagactgattttcatctctaattttcgtctaaaaaaacagcaatataagagtggcttgttacc |
51856560 |
T |
|
| Q |
101 |
cttcaaactagattgattaaacctgttttaaaacgagattgattaaagtcacgcattgcaggaccaatttcactagaatcatgtcttattattatgttcc |
200 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856561 |
cttcaaactagatcgattaaacctgatttaaaacgagattgattaaagtcacacattgcaggaccaatttcactagaatcatgtcttattattatgttcc |
51856660 |
T |
|
| Q |
201 |
ctgtttaataatcaacaacc |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
51856661 |
ctgtttaataatcaacaacc |
51856680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 51856680 - 51856711
Alignment:
| Q |
78 |
caatataagagtggcttgttacccttcaaact |
109 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
51856680 |
caatataagagtggcttgttacccttcaaact |
51856711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 8945647 - 8945755
Alignment:
| Q |
1 |
caaaataacagtaatagttaacattacattgaactttgagactgattttcatctctaattttcgtctnnnnnnncagcaatataagagtggcttgttacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
8945647 |
caaaataacagtaatagttaacattacattgaactttgagactgattttcatctataattttcgtctaaaaaaacagcaatataagagtggcttgttacc |
8945746 |
T |
|
| Q |
101 |
cttcaaact |
109 |
Q |
| |
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||||||||| |
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| T |
8945747 |
cttcaaact |
8945755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 45480441 - 45480376
Alignment:
| Q |
126 |
ttttaaaacgagattgattaaagtcacgcattgcaggaccaatttcactagaatcatgtcttatta |
191 |
Q |
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||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| ||||||| |
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| T |
45480441 |
ttttaaaacgagattgattaaagtcacacgttgcagtaccaatttgactagaatcataacttatta |
45480376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 128475 - 128421
Alignment:
| Q |
1 |
caaaataacagtaatagttaacattacattgaactttgagactgattttcatctc |
55 |
Q |
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||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
128475 |
caaaagaacagtaatagttaataatacattgaactttgagactaattttcatctc |
128421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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