View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_7 (Length: 586)
Name: NF7765_low_7
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 74 - 570
Target Start/End: Original strand, 5883669 - 5884150
Alignment:
| Q |
74 |
ttgtcaggttggtttttgcgtgtcttttacaacaataacaacaaaattggtggatttctaaagatggcaatagggagactcatatttcaaatgtaatggg |
173 |
Q |
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| T |
5883669 |
ttgtcaggttggtttttgcgtgtcttttacaacaataacaacaaaattggtggatttctaaagatggcaatagggagactcatatttcaaatgtaatgag |
5883768 |
T |
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| Q |
174 |
atgtttataatgtttatattcctaaacatttacataattggtgagtgcaatttcgtctatctcacaataaaatgaacaaagtaatatgaagagaaagaga |
273 |
Q |
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| T |
5883769 |
atgtttataatgtttatattcctaaacatttacataattggtgagtgcaatttcgtctatctcacaataaaatgaacaaagtaatatgaagagaaagaga |
5883868 |
T |
|
| Q |
274 |
ccaaaatctttcttaaaaggaatttacaaatgtgatcatgagaggggcctgagaagggtatatccatctttccaatctgaatccattatatgataaatag |
373 |
Q |
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| T |
5883869 |
ccaaaatctttcttaaaaggaatttacaaatgtgatcatgagaggggcatgagaagggtatatccatctttccaatctaaatccattatatgataaatag |
5883968 |
T |
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| Q |
374 |
caaccgaattatttagcatacacattgaaagaaaacttaggatacatatccatcatgatttcacgtcatggatatccacgatattgatatccatgatacc |
473 |
Q |
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| T |
5883969 |
caatcgaattatttagcatacacatcgaaagaaaatttaggatacatatccatcatgatttcacatcatg---------------gatatccatgatacc |
5884053 |
T |
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| Q |
474 |
gtatcatttacggtgactttaattaattgtattaacagaatagctttatatatcaaagtaactaccatctttttaagaattcttcttatgttgaaca |
570 |
Q |
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| T |
5884054 |
gtatcatttacgttgactttaattaattgtattaacagaataactttatatatcaaagtaactaccatctctttaagaattcttcttatgttgaaca |
5884150 |
T |
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