View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7765_low_8 (Length: 582)
Name: NF7765_low_8
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Original strand, 4891224 - 4891748
Alignment:
| Q |
9 |
tcgaagaatattgaccagaaactagaaaccgtgctataaagacgatacgaaagcatgtcttgttctatgataaattggaacatcaatctcttaaattggg |
108 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4891224 |
tcgaagtaaattgaccagaaactagaaaccgtgctataaagaggatacgaaagcaagtcttgttctatgataaattggaacatcaatctcttaaattgtg |
4891323 |
T |
|
| Q |
109 |
aaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatcttcaaactcatcatcaactagctggttatctgatctg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4891324 |
aaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatcttcaaactcatcatcaactagctggttatctgatctg |
4891423 |
T |
|
| Q |
209 |
gtaa---gaaatgnnnnnnnncttcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttat |
305 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4891424 |
gtaataagaaatgttttttttcttcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttat |
4891523 |
T |
|
| Q |
306 |
tcattatagttttgtgttttgtttcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaagaag |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4891524 |
tcattatagttttgtgttttgtttcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaaaaag |
4891623 |
T |
|
| Q |
406 |
agttactttcaaatgacatagcaagtatttttcaacaagaggaaaatttccaacatcaacctttgttatcttctgaaagctattcttcttcttatccttt |
505 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4891624 |
agtttctttcaaatgacatagcaagtatttttcaacaagaggaaaatttccaacatcaacctttgttatcttctgaaagctattcttcttcttatccttt |
4891723 |
T |
|
| Q |
506 |
agaaaagaatttcgaaagacccaac |
530 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4891724 |
agaaaagaatttcgaaagacccaac |
4891748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 74 - 495
Target Start/End: Original strand, 4916155 - 4916569
Alignment:
| Q |
74 |
tatgataaattggaacatcaatctcttaaattgggaaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatctt |
173 |
Q |
| |
|
|||| |||||||||| | |||||||| |||||| || ||||||||| || ||| ||||||| | ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
4916155 |
tatgctaaattggaataccaatctctgaaattgttaagcaaaaggtgttagcttgatttaataatatcaatagttattatggaaaaattaaacacatctt |
4916254 |
T |
|
| Q |
174 |
caaactcatcatcaactagctggttatctgatctggtaagaaatgnnnnnnnncttcatatattaatctagtgactatagttctaattatatg----cac |
269 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || | ||||||| || | ||| || |||||| |||||||||||||||| ||| |
|
|
| T |
4916255 |
caaatgcatcatcaactagctggctatctcattttgtaagaattgt--------------ttttattcaagtgac-atagttctaattatatatatacac |
4916339 |
T |
|
| Q |
270 |
aaatgaaatggatttaattatatgaatgatttttattca-ttatagttttgtgtttt----gtttcagctattggaagaaatggaaatagagggttgtga |
364 |
Q |
| |
|
||||||| || |||||||||| | |||||||||||| || |||| |||| | || | |||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
4916340 |
aaatgaactgaatttaattatgt-aatgatttttatacagttatcattttttcttcttctggtttcagctatttgaagaaaatgaaatagagggttgtga |
4916438 |
T |
|
| Q |
365 |
tttgtttcaacaatgtgaacaaaacttgtttggtgaagaagagttactttcaaatgacatagcaagtatttttcaacaagaggaaaatttccaacatcaa |
464 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
4916439 |
tttgtttcaacaatgcgaacaaaacttgtttggtgaagaagagcttatttcacatgacatagcaagtatttttcaacaagaggaaaatttgcaacaacaa |
4916538 |
T |
|
| Q |
465 |
cctttgttatcttctgaaagctattcttctt |
495 |
Q |
| |
|
|| |||||| || ||||||||| ||||||| |
|
|
| T |
4916539 |
ccattgttactttttgaaagctactcttctt |
4916569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University