View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7766_low_2 (Length: 674)
Name: NF7766_low_2
Description: NF7766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7766_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 19 - 658
Target Start/End: Original strand, 33355330 - 33355973
Alignment:
| Q |
19 |
ggaaaaagcgatgaagatcctcaaaaatgtattactagttcttcgaaggacgctggagcaactaagcgttctcgtccaaggagaactagactcgcatgac |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355330 |
ggaaaaagtgatgaagatcctcaaaaatgtattactagttcttcgaaggacgctggagcaactaagcgttctcgtccaaggagaactagactcgcatgac |
33355429 |
T |
|
| Q |
119 |
aaattagaagaactagactcacatgacaaattttctgctctcagcaagtgttttgttttcaccatggatttcacatttgtgatatctgtctcataatcca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355430 |
aaattagaagaactagactcacatgacaaattttctgcactcagcaagtgttttgttttcaccatggatttcacatttgtgatatctgtctcataatcca |
33355529 |
T |
|
| Q |
219 |
tatagaacggtgtaaatatttcgtattgttactagaaccagaactatggtttcacttttgaactcttacaaaagaagtgatagtattacaacccctataa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355530 |
tatagaacggtgtaaatatttcgtattgttactagaaccagaactatggtttcacttttgaactcttacaaaagaagtgatagtattacaacccctataa |
33355629 |
T |
|
| Q |
319 |
tcaagcatggtaatacaaagaattgtacattgcaaatctaaaaacaatgtcggtagttgcatctataatctataatatatgtggacaccttttaaaaata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355630 |
tcaagcatggtaatacaaagaattgtacattgcaaatctaaaaacaatgtcggtaggtgcatctataatctataatatatgtggacaccttttaaaaata |
33355729 |
T |
|
| Q |
419 |
aatatttaaatgtattaacaatcctatattattatcaaatcgtctgtccaaaaaatattataaactttatgaattgtatttatttatc-aattactgaaa |
517 |
Q |
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| T |
33355730 |
aatatttaaatgtattaacaatcctatattattatcaaatcgtctgtccaaaaaatattataaactttatgaattgtatttatttatcaaattactgaaa |
33355829 |
T |
|
| Q |
518 |
atggtttgtatatgtcatgtgtctcaactctcaacgctttgaaaatggaaaccaagttacgtgtacataataacagagttctttgaacagtcatgcaaaa |
617 |
Q |
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| T |
33355830 |
atggtttgtatatgtcatgtgtctcaactctcaccgctttgaaaatggaaaccaagttacgtgtacataataacagagttctttgaacagtcatgcaaaa |
33355929 |
T |
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| Q |
618 |
tattg---tttcctacatgtttacttttgttcaatccaattctt |
658 |
Q |
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| T |
33355930 |
tattgtttttttctacatgtttacttttgttcaatccaattctt |
33355973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 416 - 459
Target Start/End: Original strand, 33379748 - 33379791
Alignment:
| Q |
416 |
ataaatatttaaatgtattaacaatcctatattattatcaaatc |
459 |
Q |
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| T |
33379748 |
ataaatatttaaatgtattaactatcctatattattatcaaatc |
33379791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 586
Target Start/End: Original strand, 33381125 - 33381179
Alignment:
| Q |
532 |
tcatgtgtctcaactctcaacgctttgaaaatggaaaccaagttacgtgtacata |
586 |
Q |
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|||| |||||||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
33381125 |
tcatctgtctcaactcttaacgctttgaagatggaaaccaagttccgtgtacata |
33381179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 591
Target Start/End: Original strand, 33399465 - 33399518
Alignment:
| Q |
539 |
tctcaactctc-aacgctttgaaaatggaaaccaagttacgtgtacataataac |
591 |
Q |
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||||||||||| ||||||||||| |||||||||||||| | |||||||| |||| |
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| T |
33399465 |
tctcaactctctaacgctttgaacatggaaaccaagttccatgtacatattaac |
33399518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 646
Target Start/End: Complemental strand, 39307804 - 39307669
Alignment:
| Q |
521 |
gtttgtatatgtcat--gtgtctcaactctcaacgctttgaaaatggaaaccaagttacgtgta------cataataacagagtt-ctttgaacagtcat |
611 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||| ||||||||| | || |||||||||||||| |
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| T |
39307804 |
gtttgtatatgtcatttgtgtctcaactctcaacgctttgaacatcaaaaccaagttccgtgtagataatgataataacataattcctttgaacagtcat |
39307705 |
T |
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| Q |
612 |
gcaaaata-ttgtttcctacatgtttacttttgttc |
646 |
Q |
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|||||||| |||||| | || ||||||||| ||||| |
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| T |
39307704 |
gcaaaatatttgttttcaacttgtttacttatgttc |
39307669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 530
Target Start/End: Original strand, 43016309 - 43016348
Alignment:
| Q |
491 |
attgtatttatttatcaattactgaaaatggtttgtatat |
530 |
Q |
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| T |
43016309 |
attgtatttatttatcagttactgaaaatagtttgtatat |
43016348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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