View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7766_low_4 (Length: 435)
Name: NF7766_low_4
Description: NF7766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7766_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 49267239 - 49266934
Alignment:
| Q |
25 |
cttacaagaagactgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaa |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
49267239 |
cttacaagaagactgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaa |
49267140 |
T |
|
| Q |
125 |
taatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49267139 |
taatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgct |
49267040 |
T |
|
| Q |
225 |
tcttgaaccaccttctctgtctttctctaacaaacccttttccatattttctagctctatggtatggtggtcttcaaatttggaactgataaaaatagac |
324 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49267039 |
tcttgaatcaccttctctgtctttctctaacaaacccttttccatattttctagctcta-----tggtggtcttcaaatttggaactgataaaaatagac |
49266945 |
T |
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| Q |
325 |
acggtttcggg |
335 |
Q |
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| T |
49266944 |
acggtttcggg |
49266934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 25 - 279
Target Start/End: Complemental strand, 49254977 - 49254720
Alignment:
| Q |
25 |
cttacaagaagactgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaa |
124 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49254977 |
cttacaagaagactgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaa |
49254878 |
T |
|
| Q |
125 |
taatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgct |
224 |
Q |
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|||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254877 |
taatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgct |
49254778 |
T |
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| Q |
225 |
tcttgaac---caccttctctgtctttctctaacaaacccttttccatattttctagc |
279 |
Q |
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|||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49254777 |
tcttgaaccagcaccctctctgtctttctctaacaaacctttttccatattttctagc |
49254720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 49271645 - 49271447
Alignment:
| Q |
25 |
cttacaagaagactgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaa |
124 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271645 |
cttacaagaagactgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaa |
49271546 |
T |
|
| Q |
125 |
taatttgtagaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgc |
223 |
Q |
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|||||||||||||||||||||||| ||| || |||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
49271545 |
taatttgtagaaaatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 49274607 - 49274761
Alignment:
| Q |
37 |
ctgaagccagagacaccacagagagagatagca----atagctgtgctagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgt |
132 |
Q |
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||||||||||||||| |||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49274607 |
ctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgt |
49274706 |
T |
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| Q |
133 |
agaaaatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacat |
187 |
Q |
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|||||||||||||||| ||| || ||||||||| ||||||||||| ||||| |
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| T |
49274707 |
agaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 49266884 - 49266846
Alignment:
| Q |
385 |
aatacgtacaacttagattctccttattagcagtattat |
423 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
49266884 |
aatacgtacaacttagattctccttattagtagtattat |
49266846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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