View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7766_low_5 (Length: 335)
Name: NF7766_low_5
Description: NF7766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7766_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 38546457 - 38546766
Alignment:
| Q |
19 |
tgactgacacaagtatgtcaaggttgtcaatgatttactttggagggccacccttgaatgaaaagttagtacctttgccttcaatattgggatcaaaaga |
118 |
Q |
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| T |
38546457 |
tgactgacacaagtatgtcaaggttgtcaatgatttattttggagggccacccttgaatgaaaagttagtacctttgccttcaatattgggatcaaaaga |
38546556 |
T |
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| Q |
119 |
acaacagagtttgtacaaagaattcacatggagggaatacaaaaatgctgcttacaagtcaaagcttgcttataataggctcagtctctttgagaaataa |
218 |
Q |
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| T |
38546557 |
acaacagagtttgtacaaagaattcacatggagggaatacaaaaatgctgcttacaagtcaaagcttgcttataataggctcagtctctttgagaaataa |
38546656 |
T |
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| Q |
219 |
ttatttgcttctcaatgaaacgaggccaattcaattgaagggtcacatatatatctcctccattttgactatgtatctaaggatatacttcaaatatttg |
318 |
Q |
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| T |
38546657 |
ttatttgcttctcaatgaaatgaggccaattcaattgaagggtcacatatatatctcctccattttgactatgtatctaaggatatacttcaaatatttg |
38546756 |
T |
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| Q |
319 |
actctatgct |
328 |
Q |
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| T |
38546757 |
actctatgct |
38546766 |
T |
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Back To:
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 6313294 - 6313216
Alignment:
| Q |
22 |
ctgacacaagtatgtcaaggttgtcaatgatttactttggagggccacccttgaatgaaaagttagtacctttgccttc |
100 |
Q |
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| T |
6313294 |
ctgacacaacaaagtcaaggttgtcgatgatatactttggaggaccacccttgagtgaaaagatagtgcctttaccttc |
6313216 |
T |
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