View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7767_high_1 (Length: 386)
Name: NF7767_high_1
Description: NF7767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7767_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 40204053 - 40204409
Alignment:
| Q |
15 |
ctccattaacatatgtacattttacattatctaacagtggggctgatatttttctttcttttcgtaagttggccttttctcctatttatattttcaaaac |
114 |
Q |
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| T |
40204053 |
ctccattaacatatgtacattttacattatctaacagtggggccgatatttttctttcttttcgtaagttggccttttctcctatttatattttcaaaac |
40204152 |
T |
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| Q |
115 |
gcaacaaaggattcgaacttgcactagcatcaatttcccaaagggcacagccactgggctatcttgtaatcatgtttttatcctatttttagttgctcat |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40204153 |
gcaacaaaggattcaaacttgcactagcatcaatttcccaaagggcacagccactgggctatcttgtaatcatgtttttatcctgtttttagttgctcat |
40204252 |
T |
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| Q |
215 |
taatcattatg--nnnnnnnnnnnnnnncattaggtttgtatatgatgactggtctatgcctcacagtgcagcgagactgaaattcccctactattggga |
312 |
Q |
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| T |
40204253 |
taatcattatgttttttttggttttttctattaggtttgtatatgatgactggtctatgcctcacagtgcagcgagactgaaattcccctactattggga |
40204352 |
T |
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| Q |
313 |
tgagcaatgttctcaagaatcttcaaaagacgaattgtgatttatggtcaaggtgta |
369 |
Q |
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| T |
40204353 |
tgagcaatgttctcaagaatcttcaaaagacgaattgtgatttatggtcaaggtgta |
40204409 |
T |
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