View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7767_high_2 (Length: 304)
Name: NF7767_high_2
Description: NF7767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7767_high_2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 63 - 304
Target Start/End: Original strand, 17381318 - 17381556
Alignment:
| Q |
63 |
taattttattccaatttgaaggtatagaaaggttaaatttcacacttcaattttgggcatgtggttgtaacctacctgtatatcaacagggtactttgtg |
162 |
Q |
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| T |
17381318 |
taatttaattccaatttgaaggta--gaaaggttaaatttcacact-caattttgggcatgtgattgtaacctacctgtatatcaacagggtactttgtg |
17381414 |
T |
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| Q |
163 |
acagtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcccatctgtccaaggcctttggtgtgatgt |
262 |
Q |
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| T |
17381415 |
actgtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcccatctgtccaaagcctttggtgtgatgt |
17381514 |
T |
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| Q |
263 |
gtgaagcattaggaccatccactaactcatctgttcttctgc |
304 |
Q |
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| T |
17381515 |
gtgaagcattaggaccatccactaactcatctgttcttctgc |
17381556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 17381227 - 17381267
Alignment:
| Q |
13 |
gagatgaaatcaattttacctaatgttaagcaaacatattc |
53 |
Q |
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| T |
17381227 |
gagatgaaatcaattttacctaattttttgcaaacatattc |
17381267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 135 - 302
Target Start/End: Original strand, 39524313 - 39524480
Alignment:
| Q |
135 |
tacctgtatatcaacagggtactttgtgacagtatctgaaagtgcagcatcatacatatcataaggacgtccttcaaaaacatcagttaatctttgttcc |
234 |
Q |
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| T |
39524313 |
tacctgaatatcaacggggtacttagagacactgagtgagagagcagcatcaaacatatcatatggtcgacattcaaaaacatcagttaaccgttgctcc |
39524412 |
T |
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| Q |
235 |
catctgtccaaggcctttggtgtgatgtgtgaagcattaggaccatccactaactcatctgttcttct |
302 |
Q |
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| T |
39524413 |
catctgtccaaggctgctggtgtaatgtgtgaagaatttgggccatctactagttcatcagttcttct |
39524480 |
T |
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