View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_high_1 (Length: 661)
Name: NF7768_high_1
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 30 - 315
Target Start/End: Original strand, 27605566 - 27605852
Alignment:
| Q |
30 |
atagtgaaacagaagtgaatcgaaaacgaccaaatcattctatttacattgattttattagattttatttctttaatgcaaaccaaatttatgccctatg |
129 |
Q |
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| T |
27605566 |
atagtgaaacagaagtgaatcgaaaacgaccaaatcattctatttacattgattttattagattttatttctttaatgcaaaccaaatttatgccctatg |
27605665 |
T |
|
| Q |
130 |
tattccctcaattttatactttctgagtacaactaatt-gtcgaatggaaatttatcaaacaatccatatagatacgaacctttataaatattactagtt |
228 |
Q |
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| T |
27605666 |
tattccctcaattttatactttctgagtacaactgatttgtcgaattgaaatttatcaaacaatccatttagatacgaacctttataaatattactagtt |
27605765 |
T |
|
| Q |
229 |
tacgacaatttaatacaaatgctaaaccgaccatcaagatctcaactaggttggaacctaagaacactaacaaacactagcagcaca |
315 |
Q |
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| T |
27605766 |
tacgacaatttaatacaaatgctaaaccgaccatcaagatctcaactaggttggaacctaacaacactaacaaacactagcagcaca |
27605852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 409 - 533
Target Start/End: Original strand, 27605952 - 27606076
Alignment:
| Q |
409 |
tttgaaagtcctttaaacgggtgttctaaccaatgtccgttcttttagcttcatgaatattcaatcttttcttctgagtcttggataaatatagggtaaa |
508 |
Q |
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| T |
27605952 |
tttgaaagtcctttaaacgggtgttctaaccaatgtccgttcttttagcttcatgaatattcaatcttttcttctgagtcttggacaaatatagggtaaa |
27606051 |
T |
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| Q |
509 |
tacgatatctccttttgtagtaagt |
533 |
Q |
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| T |
27606052 |
tacgatatctccttttgtagtaagt |
27606076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 531 - 650
Target Start/End: Original strand, 27606112 - 27606234
Alignment:
| Q |
531 |
agttgttcaagtacatgaacgttctttctgctttacatgcttaaaattgtgaaaataa---atttttatagtgtctcaggaatgattatggtctacccaa |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
27606112 |
agttgttcaagtacatgaacgttctttctgctttacatgcttaaaattgcaaaaataatcaattttcatagtgtctcaggaatgattatggtctacccaa |
27606211 |
T |
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| Q |
628 |
atctagatattctgttggttcat |
650 |
Q |
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| T |
27606212 |
atctagatattctgttggttcat |
27606234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 9151036 - 9150990
Alignment:
| Q |
40 |
agaagtgaatcgaaaacgaccaaatcattctatttacattgatttta |
86 |
Q |
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| T |
9151036 |
agaagtgaattgaaaacgacctaatcattctccttacattgatttta |
9150990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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