View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_high_12 (Length: 349)
Name: NF7768_high_12
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 34847689 - 34848012
Alignment:
| Q |
19 |
caatcatcatatatatcaccagacacataagttcttttgtgttggatctctaatttcaatttctccctctaagagacaataaacacaagttttaaggtta |
118 |
Q |
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| T |
34847689 |
caatcatcatatatatcaccagacacataagttcttttgtgttggatctctaatttcaatttctccctctaagagacaataaacacaagttttaaggtta |
34847788 |
T |
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| Q |
119 |
aggtttgtgtcggttcaaaaaatgggcagaaagtgctcacattgtggaaacataggtcataattcaaggacatgtaattcattaagaggaagtagtagtt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
34847789 |
aggtttgtgtcggttcaaaaaatgggcagaaagtgctcacattgtggaaacataggtcataattcaaggacttgtaattcattaagaggaagtggtagtt |
34847888 |
T |
|
| Q |
219 |
ttgttggagttagactttttggtgttcaacttgatttatcttcttcttgtgtgtccatgaaaaagagttttagcatggattcttttcctacttcatcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34847889 |
ttgttggagttagactttttggtgttcaacttgatttatcttcttcttgtgtttccatgaaaaagagttttagcatggattcttttcctacttcatcttc |
34847988 |
T |
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| Q |
319 |
ttctcctacttcttcatattcttc |
342 |
Q |
| |
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||||||||||||||| | |||||| |
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| T |
34847989 |
ttctcctacttcttccttttcttc |
34848012 |
T |
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