View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_high_18 (Length: 293)
Name: NF7768_high_18
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 25 - 286
Target Start/End: Original strand, 44260876 - 44261137
Alignment:
| Q |
25 |
tgttcatgtttagttggttaatttaagtttgtgtcaggtattcatttgatccatcaacagcacatataatttatgttctatagataggagtatattgtta |
124 |
Q |
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| T |
44260876 |
tgttcatgtttagttggttaatttaagtttgtgtcaggtattcatttgatccatcaacagcacatataatttatgttctatagataggagtatattgtta |
44260975 |
T |
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| Q |
125 |
gcaattgctctctaaggatgaaagaaaagtagataaaattatattataaacatgttccaaggctccatcatcgtaaagcattcttgtaaaagccacctcc |
224 |
Q |
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| T |
44260976 |
gcaattgctctctaaggatgaaagaaaagtagataaaattatattataaacatgttccaaggctccgtcatcgtaaagcattcttgtaaaagccacctcc |
44261075 |
T |
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| Q |
225 |
agaaacaaaagagcgttattcgtcatagcaatcggcgaatctactgtcaccatttcttctca |
286 |
Q |
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| T |
44261076 |
agaaacaaaagagcgttattcgtcatagcaatcggtgaatctactgtcaccatttcttctca |
44261137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 44265085 - 44265151
Alignment:
| Q |
75 |
ccatcaacagcacatataatttatgttctatagataggagtatattgttagcaattgctctctaaggatgaaa |
147 |
Q |
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| T |
44265085 |
ccatcaacagcacatataatttatgttctacaga------tatattgttagcaattgctatctaaggatgaaa |
44265151 |
T |
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