View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7768_high_19 (Length: 290)
Name: NF7768_high_19
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 4936735 - 4936479
Alignment:
| Q |
22 |
actccaaacgaacttcataccactgaactgatccaacttctccatcaatttcaagttcacaaaaggactttgctaagaaagaaacagcatcatcaatggt |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4936735 |
actccaaacgaaattcataccactgaactgatccaacttctcaatcaatttcaagttaacaaaaggactttgctaagaaagaaacaacatcatcaatggt |
4936636 |
T |
|
| Q |
122 |
ctcatatcttgcaagatcaggaggaagagtcttgccaggccaatttgtgagccactctttcaaagtatctttcaactcttcctctgacacaaacctctca |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4936635 |
ttcatatcttgcaagatcaggaggaagagtcttgccaggccaatttgtgagccactctttcaaagtatctttcaactcttcctctgacacaaacctctca |
4936536 |
T |
|
| Q |
222 |
tccttccctggttctaatagtacataagtatctgttctctcattcacccttcttctc |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
4936535 |
tccttccctggttctaatagtacataagtatatgttctctcattttcccttcttctc |
4936479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 278
Target Start/End: Complemental strand, 4952440 - 4952184
Alignment:
| Q |
22 |
actccaaacgaacttcataccactgaactgatccaacttctccatcaatttcaagttcacaaaaggactttgctaagaaagaaacagcatcatcaatggt |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4952440 |
actccaaacgaatttcataccactgaactgatccaacttctctatcaatttcaagttttcaaaaggactttgctaagaaagaaacatcatcatcaatggt |
4952341 |
T |
|
| Q |
122 |
ctcatatcttgcaagatcaggaggaagagtcttgccaggccaatttgtgagccactctttcaaagtatctttcaactcttcctctgacacaaacctctca |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4952340 |
ttcatatcttgcaagatcaggaggtagagtcttgccaggccaatttgtgagccactctttcaaagtatctttcaactcttcctctgacacaaacctctca |
4952241 |
T |
|
| Q |
222 |
tccttccctggttctaatagtacataagtatctgttctctcattcacccttcttctc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4952240 |
tccttccctggttctaatagtacataagtatctgttctctcatttgcccttcttctc |
4952184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University