View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7768_high_2 (Length: 574)

Name: NF7768_high_2
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7768_high_2
NF7768_high_2
[»] chr4 (2 HSPs)
chr4 (85-560)||(1035969-1036439)
chr4 (270-487)||(1010990-1011207)
[»] chr2 (1 HSPs)
chr2 (1-560)||(6938307-6938857)


Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 85 - 560
Target Start/End: Complemental strand, 1036439 - 1035969
Alignment:
Q  85 aaaatgaaggtataaaatactcacctgcatcgaaaaacaacagaggaattttactgagaagaaattgactgtggtcacagtgaaaaaatctctcatcaga 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036439 aaaatgaaggtataaaatactcacctgcatcgaaaaacaacagaggaattttactgagaagaaattgactgtggtcacagtgaaaaaatctctcatcaga 1036340  T
Q  185 tgtaccactatatcttagatccacatacattgttgatggtaaatcttcattcaatgcattagacataatctccatctcaattgtgctttgatatgtttta 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1036339 tgtaccactatatcttagatccacatacattgttgatggtaaatcttcattcaatgtattagacataatctccatctcaattgtgctttgatatgtttta 1036240  T
Q  285 acatcgtttgcatcccaaaaaggagagttgtttggtaacaaccaagttgaattaaaaaatggttcacaaaataaaccttctttgtctttcccaaattgta 384  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         
T  1036239 acatcgtttgcatcccaaaaaggagagtcgtttggtaacaaccaagttgaattcaaaaatggttcacaaaataaaccttctttgtctttcccaaa----- 1036145  T
Q  385 caggcataacgcgatccgttagcatcgcgtaaagaaatgatgaagccatgctaattatttggttacctaacccatttgctggtaaccaaataatgtattt 484  Q
         ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1036144 -----ataacgcgatccgttagcatcgcgtaaagaaatgatgaagccgcggtaattatttggttacctaacccatttgctggtaacaaaataatgtattt 1036050  T
Q  485 gcatgttg-----tttttgcagcacaatcagtaccattttccttatattttgcaataattttcatgtcttcgttgaaagct 560  Q
    ||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036049 gcatgttgtttaatttttgcagcacaatcagtaccattttccttatattttgcaataattttcatgtcttcgttgaaagct 1035969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 270 - 487
Target Start/End: Complemental strand, 1011207 - 1010990
Alignment:
Q  270 ctttgatatgttttaacatcgtttgcatcccaaaaaggagagttgtttggtaacaaccaagttgaattaaaaaatggttcacaaaataaaccttctttgt 369  Q
    ||||||||||||| |||||  ||| ||| |||||||||||| || | ||||||||||||||||||||| ||||| || |||||||||| ||||| |||||    
T  1011207 ctttgatatgtttcaacatgattttcattccaaaaaggagacttttctggtaacaaccaagttgaattcaaaaaaggctcacaaaatataccttgtttgt 1011108  T
Q  370 ctttcccaaattgtacaggcataacgcgatccgttagcatcgcgtaaagaaatgatgaagccatgctaattatttggttacctaacccatttgctggtaa 469  Q
    ||||||  |||  |||  ||||||| || |  || || |  || || | ||||| || |||||||||||  |||||||| ||||| ||||| ||||||      
T  1011107 ctttcctgaatcttacgagcataacacggtttgtgaggagagcatacataaatgttgcagccatgctaaccatttggtttcctaaaccattagctggtgt 1011008  T
Q  470 ccaaataatgtatttgca 487  Q
    |||||||| |||||||||    
T  1011007 ccaaataaggtatttgca 1010990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 6938307 - 6938857
Alignment:
Q  1 aaaggtagcgtcccaaatggtgaaaaattgaggtaatttctggaaacattttgtttaactctttttcgaaaattggtgtcatgaaaaatgaaggtataaa 100  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||| |||||||||||||| || |||| |||    
T  6938307 aaaggtaacgtcccaaatggtgaaaagttgaggtgatttctggaaacattttgtttaactctttcttgaaaatcggtgtcatgaaaaaagagggtacaaa 6938406  T
Q  101 atactcacctgcatcgaaaaacaacagaggaattttactgagaagaaattgactgtggtcacagtgaaaaaatctctcatcagatgtaccactatatctt 200  Q
    ||||| |||||| || |||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||| || ||||||  |||||||| |    
T  6938407 atactgacctgcttccaaaaacaaaagaggaatattactgagaagaaattggttgtggtcacagtgaaaaaatctctcttctgatgtaggactatatcct 6938506  T
Q  201 agatccacatacattgttgatggtaaatcttcattcaatgcattagacataatctccatctcaattgtgctttgatatgttttaacatcgtttgcatccc 300  Q
    | || ||||| || || |||||| ||||||||||| |||| ||||| |  |    |||||| |||||||||||||||||||| ||| |  | ||||| ||    
T  6938507 aaattcacatgcaatgctgatggaaaatcttcatttaatgtattagccccac---ccatcttaattgtgctttgatatgtttgaactttttctgcattcc 6938603  T
Q  301 aaaaaggagagttgtttggtaacaaccaagttgaattaaaaaatggttcacaaaataaaccttctttgtctttcccaaattgtacaggcataacgcgatc 400  Q
    |||||||||| || | ||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||  ||||||| ||  |    
T  6938604 aaaaaggagatttttctggtaacaaccaagtcgaattcagaaatggttcgcaaaataaaccttctttgtcttttccaaactgtacgagcataacacgtcc 6938703  T
Q  401 cgttagcatcgcgtaaagaaatgatgaagccatgctaattatttggttacctaacccatttgctggtaaccaaataatgtatttgcatgttgtttttgca 500  Q
    |||||| | ||| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||   |||    
T  6938704 cgttaggagcgcatatagaaatgatgaagccatgctaattatttggttacctaaaccatttgcaggtaaccaaataatgtatttgcatgttgtt---gca 6938800  T
Q  501 gcacaatcagtaccattttccttatattttgcaataattttcatgtcttcgttgaaagct 560  Q
    ||| ||   |||||||||| |||| |||||| |||  ||||||||||||| ||| |||||    
T  6938801 gcagaa---gtaccatttttcttagattttgtaatttttttcatgtcttcattgtaagct 6938857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University