View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_high_26 (Length: 251)
Name: NF7768_high_26
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 1316611 - 1316474
Alignment:
| Q |
1 |
ttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcccgggaggcagggag |
100 |
Q |
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| T |
1316611 |
ttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgcctgggaggcagggag |
1316512 |
T |
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| Q |
101 |
ataatgctggaaaatctagttatcttggttaaatttag |
138 |
Q |
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| T |
1316511 |
ataatgctggaaaaactagttatcttggttaaatttag |
1316474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 1316434 - 1316331
Alignment:
| Q |
135 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
234 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1316434 |
ttaggctctggacaatatgtttatgtaaaattgcatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtccttttgaactcgt |
1316335 |
T |
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| Q |
235 |
tcat |
238 |
Q |
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|||| |
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| T |
1316334 |
tcat |
1316331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 43486742 - 43486621
Alignment:
| Q |
1 |
ttggcatataccatggaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagt--gcccgggaggcaggg |
98 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
43486742 |
ttggcatataccatgaaggcattcccgtgaccttgagtttatgaaaataggcttccaaatataacaactaggagtgatagagtgggaccaggaggcaggg |
43486643 |
T |
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| Q |
99 |
agataatgctggaaaatctagt |
120 |
Q |
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| T |
43486642 |
agataatgctggaaaaactagt |
43486621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 43486549 - 43486463
Alignment:
| Q |
135 |
ttaggctctggacaatatgtttatgtaaaattacatagcttgttcgattttaatgtcaactcaaatacattaattgcttcaatagtc |
221 |
Q |
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|||||||||||||||||||||||||||||||| || | ||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43486549 |
ttaggctctggacaatatgtttatgtaaaattgcaatgtttgtttgattttaatgtcaagtcaaatacattaattgcttcaatagtc |
43486463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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