View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7768_high_28 (Length: 239)

Name: NF7768_high_28
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7768_high_28
NF7768_high_28
[»] chr5 (17 HSPs)
chr5 (17-239)||(10559397-10559619)
chr5 (22-239)||(19605360-19605577)
chr5 (70-237)||(10659627-10659794)
chr5 (47-237)||(10651721-10651911)
chr5 (77-229)||(10588008-10588160)
chr5 (92-239)||(9825550-9825702)
chr5 (46-230)||(9827477-9827661)
chr5 (46-230)||(9835846-9836030)
chr5 (68-229)||(10716516-10716677)
chr5 (49-229)||(10605261-10605441)
chr5 (136-237)||(10746630-10746731)
chr5 (70-230)||(7193514-7193674)
chr5 (140-229)||(10740037-10740126)
chr5 (136-229)||(11048269-11048362)
chr5 (82-229)||(10581504-10581651)
chr5 (136-229)||(10762448-10762541)
chr5 (164-229)||(10612219-10612284)
[»] chr6 (5 HSPs)
chr6 (46-239)||(12932757-12932950)
chr6 (46-229)||(12907678-12907861)
chr6 (69-229)||(12900058-12900218)
chr6 (69-229)||(12949121-12949281)
chr6 (69-229)||(12958566-12958726)
[»] scaffold0692 (1 HSPs)
scaffold0692 (70-229)||(7781-7940)
[»] chr2 (1 HSPs)
chr2 (69-230)||(17922958-17923119)
[»] chr1 (3 HSPs)
chr1 (157-225)||(39875541-39875609)
chr1 (157-225)||(39890618-39890686)
chr1 (157-225)||(39898673-39898741)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 10559619 - 10559397
Alignment:
Q  17 attaatgaaataagattcctcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaa 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559619 attaatgaaataagattcttcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaa 10559520  T
Q  117 atgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559519 atgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagct 10559420  T
Q  217 atacatgtcaccatgtgtggaaa 239  Q
    |||||||||||||||||||||||    
T  10559419 atacatgtcaccatgtgtggaaa 10559397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 19605360 - 19605577
Alignment:
Q  22 tgaaataagattcctcttgcttctatcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaa 121  Q
    ||||||||||| ||  ||||||| ||| ||||||| |||||| ||  ||||||||||||||   ||||||||||||| |||||  |||| ||||||||||    
T  19605360 tgaaataagatgccgattgcttccatcatctattgttgcttcttcaactcttggtacaatacacgggtccaaaatcttcataatgttatcaggaaatgaa 19605459  T
Q  122 ttttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctataca 221  Q
     |||||||||||||| |||||||||||||||||  |||||| ||||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  19605460 atttcaacatacaaacgcagattttgaccatctgtaaacatgtcatccgtcggtcttcttcccgtaagcatttccaatataagcatcccaaagctataca 19605559  T
Q  222 tgtcaccatgtgtggaaa 239  Q
    | ||||||||||||||||    
T  19605560 tatcaccatgtgtggaaa 19605577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 10659627 - 10659794
Alignment:
Q  70 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatca 169  Q
    ||||||||||| |||||||||||||||||| | || |||||| ||||||||| |||||||| | | ||||||||||||||| |||  ||||||||||||     
T  10659627 tcttggtacaagatgtgggtccaaaatctgtaaaatattatttggaaatgaaatttcaacaaatatatgcagattttgaccctcttcaaacatttcatcc 10659726  T
Q  170 gttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtgga 237  Q
    |||||||||||||| |||| ||||||||| | ||||| ||| ||||||||||||||||||||||||||    
T  10659727 gttggtcttcttccggtaagcatttccaacagaagcaccccgaagctatacatgtcaccatgtgtgga 10659794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 47 - 237
Target Start/End: Original strand, 10651721 - 10651911
Alignment:
Q  47 tcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagatttt 146  Q
    ||||||||| || |||| || | ||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || ||||| ||| ||||| |||||    
T  10651721 tcttctatttcttcttcttcatttcttggtacaagatgtggatccaaaatctgtataatattattaggaaatgaaattccaacaaacatatgcaaatttt 10651820  T
Q  147 gaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtgga 237  Q
    |||| |||  ||||||| |||| |||||||||||||| |||| ||||||||| ||||||| ||| ||||||||||||||||||| ||||||    
T  10651821 gaccttcttcaaacattccatctgttggtcttcttccggtaagcatttccaacataagcaccccgaagctatacatgtcaccatatgtgga 10651911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 10588008 - 10588160
Alignment:
Q  77 acaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtc 176  Q
    |||| |||||||||||||||||| |||| |||||   |||||||| |||||||| ||| ||| |||||||||||||||  |||||||||||| || ||||    
T  10588008 acaagatgtgggtccaaaatctgtataagattatcttgaaatgaactttcaacaaacatatgtagattttgaccatcttcaaacatttcatctgtgggtc 10588107  T
Q  177 ttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||||||    
T  10588108 ttcttccggtgatcatttccaacataagcatcccaaagctatacatgtcacca 10588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 9825702 - 9825550
Alignment:
Q  92 aaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagatttt-----gaccatctaaaaacatttcatcagttggtcttcttcctgt 186  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||     |||||||||  ||||||| |||  ||||||||||||  ||    
T  9825702 aaaatatgcataacataattaggaaatgaaatttcaacatacatatgcagattttaatttgaccatctatgaacatttaatctattggtcttcttctcgt 9825603  T
Q  187 aatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtggaaa 239  Q
    || ||||||||||||| | || ||||||||||||||||||||||  |||||||    
T  9825602 aagcatttccaatataggaattccaaagctatacatgtcaccataagtggaaa 9825550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 9827477 - 9827661
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    |||||||||||||||||| || ||||||||||||| |||| ||| |||||||||   || ||||| ||  |||||| ||||| || ||  | | ||||||    
T  9827477 atcttctattgctgcttcttcatctcttggtacaaaatgttggttcaaaatctgtgaaagattatcagctaatgaactttcagcaaacgtacgtagattt 9827576  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
    ||||||||   |||  ||||||| || ||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||    
T  9827577 tgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatacatgtcaccat 9827661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 9835846 - 9836030
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    |||||||||||||||||| || ||||||||||||| |||| |||||||||||||   || ||||  ||  |||||| ||||| || ||  | | ||||||    
T  9835846 atcttctattgctgcttcttcatctcttggtacaaaatgttggtccaaaatctgtgaaagattaccagctaatgaactttcagcaaacgtacgtagattt 9835945  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
    ||||||||   |||  ||||||| || ||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||    
T  9835946 tgaccatcctcaaatctttcatctgtaggtcttcttccagtaatcatttccaacacgagcatcccaaagctatacatgtcaccat 9836030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 229
Target Start/End: Original strand, 10716516 - 10716677
Alignment:
Q  68 tctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcat 167  Q
    ||||||| ||||| |||||| ||||||||||  |||| ||| | ||||||||||  | ||||| |   |||||||||||||||||||  ||| | |||||    
T  10716516 tctcttgatacaagatgtggatccaaaatctttataagattgtcaggaaatgaagatgcaacaaagttatgcagattttgaccatcttgaaaaaattcat 10716615  T
Q  168 cagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||| |||||||| || |||| ||||||||| ||||| || |||||||||||||||||||||    
T  10716616 cagtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatgtcacca 10716677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 229
Target Start/End: Complemental strand, 10605441 - 10605261
Alignment:
Q  49 ttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttga 148  Q
    |||||||||| ||||  | ||||||| |||||  ||||||||||||||||   ||| ||||| |||||||||| || ||||| |   |||||||||||||    
T  10605441 ttctattgctacttctacatctcttgttacaaggtgtgggtccaaaatctctttaatattatcaggaaatgaagttgcaacaaagttatgcagattttga 10605342  T
Q  149 ccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||||||  ||| | ||||||||| ||||| || || ||||  |||||||| || || || |||||||||||||||||||||    
T  10605341 ccatcttgaaaaacttcatcagtgggtctcctaccagtaagtatttccaacatcaggattccaaagctatacatgtcacca 10605261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 10746630 - 10746731
Alignment:
Q  136 atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtg 235  Q
    |||||||||||||||||||  ||| | ||||||||| |||||||| || |||| ||||||||  ||||| || |||||||||||||| ||||||| ||||    
T  10746630 atgcagattttgaccatcttcaaaaacttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatatcaccatatgtg 10746729  T
Q  236 ga 237  Q
    ||    
T  10746730 ga 10746731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 7193674 - 7193514
Alignment:
Q  70 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatca 169  Q
    ||||||||||| || |||||||||||| || |||| ||||||||| || ||| |||||||| | | | | |||||||||||||    ||||||||||||     
T  7193674 tcttggtacaagatttgggtccaaaatatgtataagattattaggcaacgaaatttcaacaaaaatacgtagattttgaccattgtcaaacatttcatct 7193575  T
Q  170 gttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
       ||||| ||||| ||||  |||||||| | ||||||||| ||||||||||| |||||||    
T  7193574 accggtctccttccggtaagaatttccaacaaaagcatcccgaagctatacatatcaccat 7193514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 10740037 - 10740126
Alignment:
Q  140 agattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||||||||  ||| | ||||||||| |||||||| || ||||  |||||||| ||||| || |||||||||||||||||||||    
T  10740037 agattttgaccatcttgaaaaacttcatcagtgggtcttctaccggtaagtatttccaacataaggattccaaagctatacatgtcacca 10740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 11048269 - 11048362
Alignment:
Q  136 atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||||||||||||  ||| | |||||  || |||||||| || |||| ||||||||| ||||| || |||||||||||||||||||||    
T  11048269 atgcagattttgaccatcttcaaaaacttcatgggtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatgtcacca 11048362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 10581651 - 10581504
Alignment:
Q  82 atgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatcagttggtcttctt 181  Q
    ||||||||||||||| | | ||| ||||  |||||||||  || ||||| |   |||||||||||||||||||  |||    | |||||| ||||||||     
T  10581651 atgtgggtccaaaattttcttaagattagcaggaaatgatattgcaacaaagttatgcagattttgaccatcttcaaaagcgtgatcagtgggtcttcta 10581552  T
Q  182 cctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    || |||| ||||||||| ||||| || |||||||||||||||||||||    
T  10581551 ccggtaagcatttccaacataaggattccaaagctatacatgtcacca 10581504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 10762448 - 10762541
Alignment:
Q  136 atgcagattttgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||||||||||||  ||| | ||||||||| |||||||| || ||||  |||| ||| ||||| |  |||||||||||||||||||||    
T  10762448 atgcagattttgaccatcttgaaaaacttcatcagtgggtcttctaccagtaagtattttcaacataaggactccaaagctatacatgtcacca 10762541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 10612284 - 10612219
Alignment:
Q  164 tcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||| |||||||| || |||| ||||||||| ||||| || |||||||||||||| ||||||    
T  10612284 tcatcagtgggtcttctaccggtaagcatttccaacataaggattccaaagctatacatatcacca 10612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 12932950 - 12932757
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    ||||||||||||| |||| ||  ||||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   ||||||||||    
T  12932950 atcttctattgctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattt 12932851  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccatgtgtggaaa 239  Q
    |||||||||  ||| | |||||| || |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||  ||||||||    
T  12932850 tgaccatcttcaaaaagttcatcggtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcaccacatgtggaaa 12932757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 12907861 - 12907678
Alignment:
Q  46 atcttctattgctgcttcctcttctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattt 145  Q
    |||||||||| || |||| ||  ||||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   ||||||||||    
T  12907861 atcttctattcctccttcttcagctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattt 12907762  T
Q  146 tgaccatctaaaaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    |||||||||  ||| | ||||||||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12907761 tgaccatcttcaaaaagttcatcagtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12907678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 12900218 - 12900058
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   |||||||||||||||||||  ||| | ||||||    
T  12900218 ctcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatc 12900119  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12900118 agtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12900058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 12949281 - 12949121
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||||||||  |  | |||||| ||||||||| ||| |||| |   |||||||||||||||||||  ||| | ||||||    
T  12949281 ctcttggtaaaagatgtggatccaaaatctttacgaaattattgggaaatgaaattttaacaaagttatgcagattttgaccatcttcaaaaagttcatc 12949182  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12949181 agtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12949121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 229
Target Start/End: Complemental strand, 12958726 - 12958566
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||| ||||  || | ||||| |||||||||||||  |||| |   |||||||||||||||||||  ||| | ||||||    
T  12958726 ctcttggtaaaagatgtggatccaacatctttattagattatcaggaaatgaatttgtaacaaagttatgcagattttgaccatcttcaaaaagttcatc 12958627  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    ||| |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  12958626 agtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 12958566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 229
Target Start/End: Complemental strand, 7940 - 7781
Alignment:
Q  70 tcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatca 169  Q
    |||||||| || |||||| ||||||||||  |||| ||||| |||||||||| ||  |||| |   |||||||||||||||||||  ||| | |||||||    
T  7940 tcttggtaaaagatgtggatccaaaatctttataagattatcaggaaatgaaattgtaacaaagttatgcagattttgaccatcttcaaaaagttcatca 7841  T
Q  170 gttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcacca 229  Q
    || |||||||| || |||| ||||||||  ||||| || |||||||||||||||||||||    
T  7840 gtgggtcttctaccagtaagcatttccagcataaggattccaaagctatacatgtcacca 7781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 17922958 - 17923119
Alignment:
Q  69 ctcttggtacaatatgtgggtccaaaatctgcataacattattaggaaatgaattttcaacatacaaatgcagattttgaccatctaaaaacatttcatc 168  Q
    ||||||||| || |||||| ||||||||||  |||| |||   |||||||||| ||  |||| |   ||| ||||||||||| |||  ||| | ||||||    
T  17922958 ctcttggtaaaagatgtggatccaaaatctttataagattgcaaggaaatgaaattgtaacaaagttatgtagattttgaccgtctttaaaaagttcatc 17923057  T
Q  169 agttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtcaccat 230  Q
     || ||||||||||| |||| ||||||||  ||||| || ||||||||||||||||||||||    
T  17923058 ggtgggtcttcttccggtaagcatttccagcataaggattccaaagctatacatgtcaccat 17923119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39875541 - 39875609
Alignment:
Q  157 aaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtc 225  Q
    |||||||||||||||||||||||| || || ||||| ||||| | ||| ||||||||||||||||||||    
T  39875541 aaacatttcatcagttggtcttctcccagtcatcatctccaaaagaagaatcccaaagctatacatgtc 39875609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39890618 - 39890686
Alignment:
Q  157 aaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtc 225  Q
    |||||||||||| ||||||||||| || || ||||| ||||| | ||| ||||||||||||||||||||    
T  39890618 aaacatttcatcggttggtcttctcccagtcatcatctccaaaagaagaatcccaaagctatacatgtc 39890686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 39898673 - 39898741
Alignment:
Q  157 aaacatttcatcagttggtcttcttcctgtaatcatttccaatataagcatcccaaagctatacatgtc 225  Q
    |||||||||||||||||||||||| || || | ||| ||||| | ||| ||||||||||| ||||||||    
T  39898673 aaacatttcatcagttggtcttctcccagttaacatctccaaaagaagaatcccaaagctgtacatgtc 39898741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University