View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7768_high_35 (Length: 219)

Name: NF7768_high_35
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7768_high_35
NF7768_high_35
[»] chr7 (5 HSPs)
chr7 (14-99)||(39728843-39728928)
chr7 (17-99)||(5398787-5398869)
chr7 (17-99)||(5403221-5403303)
chr7 (111-219)||(19914156-19914269)
chr7 (111-219)||(35552754-35552867)
[»] chr4 (5 HSPs)
chr4 (111-219)||(32384893-32385006)
chr4 (17-99)||(3539785-3539867)
chr4 (17-99)||(3544208-3544290)
chr4 (17-99)||(34695474-34695556)
chr4 (111-211)||(55479711-55479816)
[»] chr5 (3 HSPs)
chr5 (111-215)||(17430983-17431092)
chr5 (111-212)||(41865673-41865779)
chr5 (111-215)||(41612171-41612280)
[»] chr2 (4 HSPs)
chr2 (14-99)||(6517023-6517108)
chr2 (111-215)||(40109821-40109930)
chr2 (151-211)||(19469451-19469511)
chr2 (151-211)||(18845197-18845257)
[»] chr8 (4 HSPs)
chr8 (111-211)||(31640062-31640167)
chr8 (114-215)||(25878989-25879095)
chr8 (114-211)||(25192563-25192665)
chr8 (151-211)||(39432139-39432199)
[»] chr1 (2 HSPs)
chr1 (111-215)||(52691008-52691117)
chr1 (111-206)||(705649-705749)
[»] chr6 (1 HSPs)
chr6 (111-214)||(25349694-25349802)
[»] chr3 (1 HSPs)
chr3 (112-211)||(53940790-53940894)


Alignment Details
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 39728928 - 39728843
Alignment:
Q  14 cagctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39728928 cagctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaactactgatatggaaattgatgtgttga 39728843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 5398869 - 5398787
Alignment:
Q  17 ctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||| |||||||||||||||    
T  5398869 ctataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttga 5398787  T

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Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 5403303 - 5403221
Alignment:
Q  17 ctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||| |||||||||||||||    
T  5403303 ctataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttga 5403221  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 19914156 - 19914269
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |     | ||||||| ||||||| ||||||||||||||| || ||||||||||||||    
T  19914156 aaaacatcaaaatggaatttataaacataggcagtggaaccatttcagcacaagatgttctggaagaccaccccttaaaaagaactgtcaaacaatattt 19914255  T
Q  206 acaaaattacagtc 219  Q
    ||||||||||||||    
T  19914256 acaaaattacagtc 19914269  T

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Target: chr7; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 35552754 - 35552867
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |     | |||||||| |||||||| ||||||||||||| | ||| |||||||||||    
T  35552754 aaaacatcaaaatggaatttataaacataggcagtggaaccatttcagcacaagatgtattggaaggcaaccccttaaaaagaatagtaaaacaatattt 35552853  T
Q  206 acaaaattacagtc 219  Q
    ||||||||||||||    
T  35552854 acaaaattacagtc 35552867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 32385006 - 32384893
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |     | ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  32385006 aaaacatcaaaatggaatttataaacataggcagtggaaccatttcagcataagatgtactggaaggccaccccgtaaaaagaacagtcaaacaatattt 32384907  T
Q  206 acaaaattacagtc 219  Q
    ||||||||||||||    
T  32384906 acaaaattacagtc 32384893  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 3539867 - 3539785
Alignment:
Q  17 ctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    ||||||||||||||||||||||||| |||| |||||||| ||| |||||||||||| |||||||||| |||||||||||||||    
T  3539867 ctataacataatgacacaatgaattcaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttga 3539785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 3544290 - 3544208
Alignment:
Q  17 ctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    ||||||||||||||||||||||||| |||| |||||||| ||| |||||||||||| |||||||||| |||||||||||||||    
T  3544290 ctataacataatgacacaatgaattcaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgatgtgttga 3544208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 34695474 - 34695556
Alignment:
Q  17 ctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||| |||||| ||||||||    
T  34695474 ctataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattgttgtgttga 34695556  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 211
Target Start/End: Original strand, 55479711 - 55479816
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||| ||||||||||||| ||||||||| |     | |||||||||||||  |||||||||||||||| |||||||||||||||||    
T  55479711 aaaacatcaaaatggaatatataaacataggcagtggaaccatttcagcacaagatgtactggacagccaccccttaaaaagaacagtcaaacaatattt 55479810  T
Q  206 acaaaa 211  Q
    ||||||    
T  55479811 acaaaa 55479816  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 17430983 - 17431092
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| ||||||||||||||| |||||| ||||||||| |     | ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  17430983 aaaacatcaaaatggaatttataaatataggcagtggaaccatttcagcacaagatgtactgaaaggccaccccttaaaaagaacagtcaaacaatattt 17431082  T
Q  206 acaaaattac 215  Q
    ||||||||||    
T  17431083 acaaaattac 17431092  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 41865779 - 41865673
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||||||||||||||| | ||||||||| |     | ||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  41865779 aaaacatcaaaatggaatttataaacatagacagtggaaccatttcagcacaagatgtactggaagaccacctcttaaaaagaacagtcaaacaatattt 41865680  T
Q  206 acaaaat 212  Q
     ||||||    
T  41865679 gcaaaat 41865673  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 41612171 - 41612280
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| ||||||||||||||||||||||   ||||||| |     | ||||||||||| |||| |||||||||||||| | || ||||||||||||    
T  41612171 aaaacatcaaaatggaatttataaacataggcaccggaaccattttagaacaagatgtactgaaaggtcaccccttaaaaagaataggcaaacaatattt 41612270  T
Q  206 acaaaattac 215  Q
    ||||||||||    
T  41612271 acaaaattac 41612280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 6517023 - 6517108
Alignment:
Q  14 cagctataacataatgacacaatgaattgaaataaatatttgtaatttgatgcaataaattactgatatggaaattgatgtgttga 99  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||||||||| |||||| ||||||||    
T  6517023 cagctataacataatgacacaatgaattgaaatgaatatttgcaatctgatgcaataaactactgatatgaaaattggtgtgttga 6517108  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 40109821 - 40109930
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| ||||||||||||||||||||||  || ||||| |     | ||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  40109821 aaaacatcaaaatggaatttataaacataggctctgaaaccatttcagcacaagatgtactaaaaggccaccccttaaaaagaacagtcaaacaatattt 40109920  T
Q  206 acaaaattac 215  Q
    | ||||||||    
T  40109921 ataaaattac 40109930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 19469511 - 19469451
Alignment:
Q  151 cagtaaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatatttacaaaa 211  Q
    ||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  19469511 cagtacaagatgtactggagggccacccctaaaaaagaacagtcaaacaatatttacaaaa 19469451  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 18845257 - 18845197
Alignment:
Q  151 cagtaaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatatttacaaaa 211  Q
    ||||| ||||||||||| | |||||| | | || ||| |||||||||||||||||||||||    
T  18845257 cagtacaagatgtactgaagggccactcgtaaacaagaacagtcaaacaatatttacaaaa 18845197  T

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Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 31640167 - 31640062
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||| ||||||||||||| ||||||||| |     | ||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  31640167 aaaacatcaaaatggaatatataaacataggcagtggaaccatttcagcacaagatgtactggacggccaccccttaaaaagaacagtcaaacaatattt 31640068  T
Q  206 acaaaa 211  Q
    ||||||    
T  31640067 acaaaa 31640062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 25878989 - 25879095
Alignment:
Q  114 acatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatatttaca 208  Q
    |||||| |||||||||||||||||||||| ||||||||| |     | ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||    
T  25878989 acatcaaaatggaatttataaacataggcagtggaaccatttcagcacaagatgtactgaaaggccacctcttaaaaagaacagtcaaataatatttaca 25879088  T
Q  209 aaattac 215  Q
    |||||||    
T  25879089 aaattac 25879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 25192563 - 25192665
Alignment:
Q  114 acatcacaatggaatttataaacataggcggtggaacc-----agtaaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatatttaca 208  Q
    |||||| |||||||| ||| ||||||||| ||| ||||     |||| ||||||||||||| |||||||||| |||||  ||||||||||||||||||||    
T  25192563 acatcaaaatggaatatattaacataggcagtgaaaccgtttcagtacaagatgtactggagggccacccctaaaaaacaacagtcaaacaatatttaca 25192662  T
Q  209 aaa 211  Q
    |||    
T  25192663 aaa 25192665  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 39432139 - 39432199
Alignment:
Q  151 cagtaaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatatttacaaaa 211  Q
    ||||| ||||||||||| | ||||| |||| ||| || |||||||||||||||||||||||    
T  39432139 cagtacaagatgtactgaagggccatccctaaaagagaacagtcaaacaatatttacaaaa 39432199  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 52691008 - 52691117
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||| ||||||||||||  ||||||||| |     | ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  52691008 aaaacatcaaaatggaatatataaacataggtagtggaaccatttcagcacaagatgtactggaaggccaccccttaaaaagaaaagtcaaacaatattt 52691107  T
Q  206 acaaaattac 215  Q
    ||||||||||    
T  52691108 acaaaattac 52691117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 705649 - 705749
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaac-----cagtaaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||||||||||||||||||||| ||  |||     ||| | ||||||||||| ||||| ||||||||||||| |||||||||||||||||    
T  705649 aaaacatcaaaatggaatttataaacataggcagtaaaactatttcagcacaagatgtactgaaaggctaccccttaaaaagaacagtcaaacaatattt 705748  T
Q  206 a 206  Q
    |    
T  705749 a 705749  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 25349694 - 25349802
Alignment:
Q  111 aaaacatcacaatggaatttataaacataggcggtggaaccagtaaa-----agatgtactggaaggccaccccttaaaaagcacagtcaaacaatattt 205  Q
    ||||||||| |||| ||||||||||||||||| || |||||| |  |     |||||||||| ||||||||||||||||||| |||||||||||||||||    
T  25349694 aaaacatcaaaatgaaatttataaacataggcagtagaaccatttcagcccaagatgtactgaaaggccaccccttaaaaagaacagtcaaacaatattt 25349793  T
Q  206 acaaaatta 214  Q
    |||||||||    
T  25349794 acaaaatta 25349802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 53940790 - 53940894
Alignment:
Q  112 aaacatcacaatggaatttataaacataggcggtggaaccagt-----aaaagatgtactggaaggccaccccttaaaaagcacagtcaaacaatattta 206  Q
    |||||||| |||||||| ||||||||||||| ||||||||| |     | ||||||||||||| ||||||||||||||||| | ||||||||||||||||    
T  53940790 aaacatcaaaatggaatatataaacataggcagtggaaccatttcagcacaagatgtactggacggccaccccttaaaaagaagagtcaaacaatattta 53940889  T
Q  207 caaaa 211  Q
    |||||    
T  53940890 caaaa 53940894  T

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