View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_high_4 (Length: 465)
Name: NF7768_high_4
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_high_4 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 45777 - 45414
Alignment:
| Q |
12 |
ataatactatatagtatataccatttctcttagcagtatagtatatatcatcatcagcttatttgtgctcacactatggttgttaggggttcatacaata |
111 |
Q |
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| T |
45777 |
ataatactatatagtatataccatttctcttggcagtatattatatatcatcatcagcttatatgtgctcacactatggttgttaggggttcatacaata |
45678 |
T |
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| Q |
112 |
aatataagaaaaaccatggtttttttataggcaagaacaatggttctcataggnnnnnnnnnnnnnnnnattgtgagataaccaaataattggatataaa |
211 |
Q |
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| T |
45677 |
aatataagaaaaaccatggtttttttataggcaagaactatggttctcataggtttttttttttt----attgtgagataaccaaataattggatgtaaa |
45582 |
T |
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| Q |
212 |
aatactattcaaagcataagatacatgttgattcgaaaatgtttcaacacaacaaaatgactttgatagatcgatctagactttaagtctgatttttgag |
311 |
Q |
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| T |
45581 |
aatactattcaaagcataagatacatgttgagtcgaaaat-tttcaatacaacaaaatgactttgatagatcgatctagactttaagtctgatttttgat |
45483 |
T |
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| Q |
312 |
agggttcttaattgatcggcttaaagttacaaacatgtagttgtgaattaatgaaacgtatgggtattt |
380 |
Q |
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| T |
45482 |
agggttcttaattgatcggtttaaagtaacaaacatgtagttttgaattaatgaaacgtatgggtattt |
45414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 71894 - 71796
Alignment:
| Q |
50 |
tagtatatatcatcatcagcttatttgtgctcacactatggttgttaggggttcatacaataaatataagaaaaaccatggtttttttataggcaagaac |
149 |
Q |
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| T |
71894 |
tagtatataccatcatccccttatatgtgttcatactttggttgttacggattcatacaataaaaataagaaaaatcat-gtttttttagaggcacgaac |
71796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 47242 - 47173
Alignment:
| Q |
69 |
cttatttgtgctcacactatggttgttaggggttcatacaataaatataagaaaaaccatggttttttta |
138 |
Q |
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| T |
47242 |
cttatatgtgttcatactttggttgttacggattcatacaataaaaataagaaaaaccatgtttatttta |
47173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 15723337 - 15723239
Alignment:
| Q |
50 |
tagtatatatcatcatcagcttatttgtgctcacactatggttgttaggggttcatacaataaatataagaaaaaccatggtttttttataggcaagaac |
149 |
Q |
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| T |
15723337 |
tagtatataccatcatccccttatatgtgttcatactttggttgttacggattcatacaataaaaataagaaaaatcat-gtttttttagaggcacgaac |
15723239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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