View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_11 (Length: 427)
Name: NF7768_low_11
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 2025696 - 2026014
Alignment:
| Q |
14 |
agaatatggagagcatatccataaattaacactatagcaaaagagaacctaaccttgaaaaaataactcaaatattgaaacgaatacacatttgatcaat |
113 |
Q |
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| T |
2025696 |
agaaaatggagagcatatccataaattaacactatagcagaagagaacctaaccttgaaaaaataactcaaatattgaaacgaatacacatttgatcaat |
2025795 |
T |
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| Q |
114 |
agaatttttcggattctcagctataccggatggtatagaaaccaaaaggagtgtttctgctcattgtcgtagcttctggttgcattgatatgctgagtgt |
213 |
Q |
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| T |
2025796 |
agaatttttcggattctcagctataccggatggtatagaaaccaaaaggagtgtttctgctcattgttgtagcttctgattgcattgagatgccgattgt |
2025895 |
T |
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| Q |
214 |
tgtgatacggagcgtcgacatctgagttatacctgatgtttgcatggatatggaagaataagttatgtcatgtgccgcaatcttgggctacgacggggat |
313 |
Q |
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| T |
2025896 |
tgtgatatggagcgtcgacatctgagttatacctgatgtttgtatggatatggaaaaataagttatgtcatgtgccgcaatctcgggctacgacggggat |
2025995 |
T |
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| Q |
314 |
attctttttaagaattatc |
332 |
Q |
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| T |
2025996 |
attctttttaagaattatc |
2026014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 37784008 - 37784047
Alignment:
| Q |
372 |
taatgttatgagaatgagattttgctcaagagtggcttct |
411 |
Q |
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| T |
37784008 |
taatgttatgagaatgagattttgctcaagagtggcttct |
37784047 |
T |
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