View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_13 (Length: 405)
Name: NF7768_low_13
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_13 |
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| [»] scaffold0012 (3 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 161353 - 160973
Alignment:
| Q |
17 |
actaattgtctacgtgaatgatattattgttatgagaaataatcgagctgaattctcaagctcgaatgacaagttaacaggatgtttgaaattaaggatt |
116 |
Q |
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| T |
161353 |
actaattgtctacgtgaatgatattattgttatgagaaataatcgagctgaattctcaagctcgaatgacaagttaacaggatgtttgaaattaaggatt |
161254 |
T |
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| Q |
117 |
tgaatactgaaattaat-tttcctgaggatataatttgctagatctaaagaaaggtatacttatgattaataaaacctaatataaaagatgcagcgaaat |
215 |
Q |
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| T |
161253 |
tgaatactgaaattaatatttcctaaggatataatttgctagatctaaagaaaggtatacttatgattaataaaacctaatataaaagatgcagcgaaat |
161154 |
T |
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| Q |
216 |
ctgtcaccaggaatatgattaatctataaggtagtatgactgataggagatcaatgcatggtcatcgtaaattcattgacgggaaccttatgagaaacag |
315 |
Q |
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| T |
161153 |
cggtcaccaggaatatgattaatctataaggtagtatgactgataggagatcaatgcatggtcatcgtaaattcattgacgggaaccttatgagaaacag |
161054 |
T |
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| Q |
316 |
aatgtggcggctaggagcagtgctcgagtagaattggaatgaaaggcgttgaaattatgtgaaattgaaaatctacaacac |
396 |
Q |
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| T |
161053 |
aatgtggcggctaggagcagtgctcgagtagaatttgaatgaaaggcgttgaaatcatgtgaaattgaaaatctacaacac |
160973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 361
Target Start/End: Complemental strand, 158936 - 158857
Alignment:
| Q |
282 |
gtaaattcattgacgggaaccttatgagaaacagaatgtggcggctaggagcagtgctcgagtagaattggaatgaaagg |
361 |
Q |
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| T |
158936 |
gtaaattcattgacaggaaccttgtgagaaacagaatatgctggccagaagcattactcgagtagaatttgaatgaaagg |
158857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Complemental strand, 153088 - 153038
Alignment:
| Q |
246 |
gtagtatgactgataggagatcaatgcatggtcatcgtaaattcattgacg |
296 |
Q |
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| T |
153088 |
gtagtatgactgataggagatcattgtatggttattgtaaattcattgacg |
153038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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