View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_14 (Length: 403)
Name: NF7768_low_14
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 72 - 246
Target Start/End: Original strand, 10922533 - 10922706
Alignment:
| Q |
72 |
ttatcaaagtatacgtatgctggcgtgcaagaaaagctttacaaggattcaaacaaaaccatagattgagatatgccggcannnnnnncctcgttaaatc |
171 |
Q |
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| T |
10922533 |
ttatcaaagtattcgtatgccggcgtgcaagaaaagctttacaaggattcaaacaaaactatagattgagatatgcgggcatttttt-cctcgttaaatc |
10922631 |
T |
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| Q |
172 |
aaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat |
246 |
Q |
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| T |
10922632 |
aaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgttttctatgtgttaatgttat |
10922706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 10935174 - 10935320
Alignment:
| Q |
243 |
ttataacattttaaagattacatatgcttctacaaatatttccttcatgtctaaatcacct-aaacaaaacactagcatattttctacaatgggagctat |
341 |
Q |
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| T |
10935174 |
ttataacattttaaagattacatatgcttctacaaatatttccttcatgtctaaatcacctaaaacaaaacactagcatcttttctacaatgggagctat |
10935273 |
T |
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| Q |
342 |
tccaactttctctctaatgat-attgttcgtaatactgcattgttgg |
387 |
Q |
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| T |
10935274 |
tccaactttctctttaatgataattgttcgtagtactgcattgttgg |
10935320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 387
Target Start/End: Original strand, 10959734 - 10959857
Alignment:
| Q |
262 |
acatatgcttctacaaatatttccttcatgtctaaatcacct-aaacaaaacactagcat-attttctacaatgggagctattccaactttctctctaat |
359 |
Q |
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| T |
10959734 |
acatatgcttctacaagtctttcctacatgtataaatcacctaaaacaagactcaagcatctttttttacaatgagagccattccaa----ctctctaat |
10959829 |
T |
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| Q |
360 |
gatattgttcgtaatactgcattgttgg |
387 |
Q |
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| T |
10959830 |
gatattgtttctaatactgcattattgg |
10959857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 45407596 - 45407654
Alignment:
| Q |
169 |
atcaaagccggccacgttcattgcagtgatcgtaacatgaatgtcttattataagtgtt |
227 |
Q |
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| T |
45407596 |
atcaaagccggccatgttcattgcagtaatcgtaacatgaatgtcttattataagtgtt |
45407654 |
T |
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