View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_15 (Length: 400)
Name: NF7768_low_15
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 5416075 - 5416432
Alignment:
| Q |
18 |
aaatcaaagttcaaaatttgttgaagcaatagactcgaagtttcgcagctttccaaaagtttctgtaagtgtaattaatctttttcatttaatatata-- |
115 |
Q |
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| T |
5416075 |
aaatcaaagttcaaaatttgttgaagcaatagactcgaagtttcgcagctttccaaaagtttctgtaagtgtaat----ctttttcatttaatatatagt |
5416170 |
T |
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| Q |
116 |
---cccgcgnnnnnnngctttaattttgtactctcctatacaaaacaaatatggtccaccaactcttctttccacgaaggaaatgtcat----------- |
201 |
Q |
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| T |
5416171 |
atacccgcgtttttttgctttaattt-gtactctcctatacaaa-caaatatggtccaccaactcttctttccacgaaggaaatgtcatgtcattcaatt |
5416268 |
T |
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| Q |
202 |
----tcaaactttctcctccttttcttagaagcaaccttgttcatgactcggtcactacatataaacataaaccattctttgtttgatctcagattttcc |
297 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5416269 |
tcattcaaacttgctcctccttttcttagaagc-------ttcatgactcggtcactacatataaacataaaccattctttgtttgatctcagattttcc |
5416361 |
T |
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| Q |
298 |
aattttattttatttcattcataataactaacagg-ttaggttacatatacacaaattctaatccataaat |
367 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
5416362 |
aattttattttatttcattcataataactaacaggtttaggttacatatacacaaagtctaatccataaat |
5416432 |
T |
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