View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7768_low_16 (Length: 388)
Name: NF7768_low_16
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_16 |
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| [»] scaffold0139 (1 HSPs) |
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| [»] scaffold0679 (1 HSPs) |
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Alignment Details
Target: scaffold0139 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0139
Description:
Target: scaffold0139; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 23080 - 22712
Alignment:
| Q |
1 |
agttacatgttcctattaaactaagtctgcttgtttaacttgaaattaagagcatatatattagaatcggttatggcatctcagaaactttgtttatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
23080 |
agttacatgttcctattaaactaagtctgcttgtttaatttgaaattaagagcatatatattaaaaccggttatggcatctcagaaactttgtttatgta |
22981 |
T |
|
| Q |
101 |
ctgtgtataacaatgactaggaacgaaaaaatataggtacaataggtaaatgaagcttcagtgaaaattagaatagagtcattaattatattattt---g |
197 |
Q |
| |
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| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
22980 |
cagtgtataacaatgattaggaacgaaagaatataggtacaataggtaaatgaagctttagtgaaaattagaatagagtcattaattatattatttgatg |
22881 |
T |
|
| Q |
198 |
atgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattttcttgattttagtttttagtcatatataataatgatgaattattt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22880 |
atgcataatcccttctcgctcacgtcattattttaagtta---taatagtaattttcttgattttagtttttagtcatatataataatgatgaattattt |
22784 |
T |
|
| Q |
298 |
ttagatgtgtattgatgtgttaattaacgatatataattgatgctttatttatgaaagtgtaattgatgtgt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22783 |
ttagatgtgtattgatgtgttaattaacgatatataattgatgctttatttatgaaagtgtaattgatgtgt |
22712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0679 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0679
Description:
Target: scaffold0679; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 1981 - 2341
Alignment:
| Q |
1 |
agttacatgttcctattaaactaagtctgcttgtttaacttgaaattaagagcatatatatt--agaatcggttatggcatctcagaaactttgtttatg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |
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|
| T |
1981 |
agttacatgttcctattaaactaagtctgcttgtttagtttgaaattaagagcatatatatataagaaccggttatggcatctcagaaactttgttcatg |
2080 |
T |
|
| Q |
99 |
tactgtgtataacaatgactaggaacgaaaaaatataggtacaataggtaaatgaagcttcagtgaaaattagaatagagtcattaattatattatttga |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
2081 |
tactgtgtataacaattactaggaacgaaagaatataggtacaataggtaaatgaagctttagtgaaaattagaatagagtcatta---------tttga |
2171 |
T |
|
| Q |
199 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattttcttgattttagtttttagtcatatataataatgatgaattatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2172 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattt-cttggttttagtttttagtcatatataataatgatgaattatttt |
2270 |
T |
|
| Q |
299 |
tagatgtgtattgatgtgttaattaacgatatataattgatgctttatttatgaaagtgtaattgatgtgt |
369 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2271 |
tagatgtgtattgatgtgttaattaaccatatataattgatgctttatttatgaaagtgtaattgatgtgt |
2341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 11391430 - 11391790
Alignment:
| Q |
1 |
agttacatgttcctattaaactaagtctgcttgtttaacttgaaattaagagcatatatatt--agaatcggttatggcatctcagaaactttgtttatg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |
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|
| T |
11391430 |
agttacatgttcctattaaactaagtctgcttgtttaatttgaaattaagagcatatatatataagaaccggttatggcatctcagaaactttgttcatg |
11391529 |
T |
|
| Q |
99 |
tactgtgtataacaatgactaggaacgaaaaaatataggtacaataggtaaatgaagcttcagtgaaaattagaatagagtcattaattatattatttga |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
11391530 |
tactgtgtataacaattactaggaacgaaagaatataggtacaataggtaaatgaagctttagtgaaaattagaatagagtcatta---------tttga |
11391620 |
T |
|
| Q |
199 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattttcttgattttagtttttagtcatatataataatgatgaattatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11391621 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattt-cttggttttagtttttagtcatatataataatgatgaattatttt |
11391719 |
T |
|
| Q |
299 |
tagatgtgtattgatgtgttaattaacgatatataattgatgctttatttatgaaagtgtaattgatgtgt |
369 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11391720 |
tagatgtgtattgatgtgttaattaaccatatataattgatgctttatttatgaaagtgtaatttatgtgt |
11391790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 28709222 - 28708862
Alignment:
| Q |
1 |
agttacatgttcctattaaactaagtctgcttgtttaacttgaaattaagagcatatatatt--agaatcggttatggcatctcagaaactttgtttatg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
28709222 |
agttacatgttcctattaaactaagtctgcttgtttagtttgaaattaagagcatatatatataagaaccggttatggcatctcagaaactttgttcatg |
28709123 |
T |
|
| Q |
99 |
tactgtgtataacaatgactaggaacgaaaaaatataggtacaataggtaaatgaagcttcagtgaaaattagaatagagtcattaattatattatttga |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
28709122 |
tactgtgtataacaattactaggaacgaaagaatataggtacaataggtaaatgaagctttagtgaaaattagaatagagtcatta---------tttga |
28709032 |
T |
|
| Q |
199 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattttcttgattttagtttttagtcatatataataatgatgaattatttt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28709031 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattt-cttggttttagtttttagtcatatataataatgatgaattatttt |
28708933 |
T |
|
| Q |
299 |
tagatgtgtattgatgtgttaattaacgatatataattgatgctttatttatgaaagtgtaattgatgtgt |
369 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28708932 |
tagatgtgtattgatgtgttaattaaccatatataattgatgctttatttatgaaagtgtaattgatgtgt |
28708862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 5842529 - 5842169
Alignment:
| Q |
1 |
agttacatgttcctattaaactaagtctgcttgtttaacttgaaattaagagcatatatatt--agaatcggttatggcatctcagaaactttgtttatg |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
5842529 |
agttacatgttcctattaaactaagtctgcttgtttattttgaaattaagagcatatatatataagaaccggttatggcatctcagaaactttgttcatg |
5842430 |
T |
|
| Q |
99 |
tactgtgtataacaatgactaggaacgaaaaaatataggtacaataggtaaatgaagcttcagtgaaaattagaatagagtcattaattatattatttga |
198 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5842429 |
tactgtgtataacaattactaggaacgaaagaatataggtacaataggtaaatgaagctttagtgaaaattagaatagagtcatta---------tttga |
5842339 |
T |
|
| Q |
199 |
tgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaattttcttgattttagtttttagtcatatataataatgatgaattatttt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5842338 |
tgcataatcccttctcgctcacgtcattattttaagttaaattaatagtaattt-cttggttttagtttttagtcatatataataatgatgaattatttt |
5842240 |
T |
|
| Q |
299 |
tagatgtgtattgatgtgttaattaacgatatataattgatgctttatttatgaaagtgtaattgatgtgt |
369 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5842239 |
tagatgtgtattgatgtgttaattaaccatatataattgatgctttatttatgaaagtgtaattgatgtgt |
5842169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Original strand, 24178423 - 24178495
Alignment:
| Q |
181 |
attaattatattatttgatgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaatttt |
253 |
Q |
| |
|
|||| |||||||||||||||||| |||||| | |||| | ||||||||||||| |||| |||||| |||||| |
|
|
| T |
24178423 |
attagttatattatttgatgcatgatccctcgttgctctcatcattattttaagctaaaataatagcaatttt |
24178495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 42145991 - 42145919
Alignment:
| Q |
181 |
attaattatattatttgatgcataatcccttctcgctcacgtcattattttaagttaaagtaatagtaatttt |
253 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| | ||| | ||||||||||||| |||| |||||| |||||| |
|
|
| T |
42145991 |
attagttatattatttgatgcatgatcccttttttctctcatcattattttaagctaaaataatagcaatttt |
42145919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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