View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_17 (Length: 381)
Name: NF7768_low_17
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 11084043 - 11083720
Alignment:
| Q |
1 |
taaaaacaatatatgcaactcttatgcaacccacattttaaattttttatttccacttaatgttgtcttatttaagataattcaatataaattaaccata |
100 |
Q |
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| T |
11084043 |
taaaaacaatatatgcaacttttatgcaacccacattttttattttttatttccacttaatgttgtcttatttaagataattcaatataaattaaccata |
11083944 |
T |
|
| Q |
101 |
tatgatatatttgatcgatgagacannnnnnngaacaaaaatggataaattttcgtttgttataagattgggtttccaaatttatttggtccaggattgg |
200 |
Q |
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| T |
11083943 |
t---------ttgatcgatgagacatttttttgaacaaaaatggataaattttcatttgttataagattgggtttccaaatttatttggtccaggattgg |
11083853 |
T |
|
| Q |
201 |
tccaccactctggatgaaacaagtttgttacgtgattcatgacatatgtatgcttgacttattatattttaattgggtttattaaatcttgaatcatgga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11083852 |
tccaccactctggatgaaacaagtttgttacgtgattcatgacatatgtatgcttgacttattattttttaattgggtttattaaatcttgaatcatgga |
11083753 |
T |
|
| Q |
301 |
aatctgttcctttgtctgtgatatcattggtta |
333 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
11083752 |
aatctgttcctttgtctttgatatcattggtta |
11083720 |
T |
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