View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_18 (Length: 381)
Name: NF7768_low_18
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 164 - 366
Target Start/End: Complemental strand, 23211140 - 23210938
Alignment:
| Q |
164 |
cttaaagatcatgagatgtaagctagtataaaactcatcactctaatattgtaatcttttcaacacttcctctcttttgatttaagttgaaacataatag |
263 |
Q |
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| T |
23211140 |
cttaaagaccatgagatgtaagctagtataaaactcatcactccaatattgtaatcttttcaacacttcctctctgctgatttaagttgaaaaataatag |
23211041 |
T |
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| Q |
264 |
atctcatataaagttacatgacttattaaaatatcagcaaataagagatcgagtattgaaaatagagtattaaagtgaatgtgactaacattatttctta |
363 |
Q |
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| T |
23211040 |
atctcatataaagttacatgatttattaaaatatcagcaaataagagattgaatattgaaaatagagtattaaagtgaatgtgactaacattatttctta |
23210941 |
T |
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| Q |
364 |
tag |
366 |
Q |
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||| |
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| T |
23210940 |
tag |
23210938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23211334 - 23211274
Alignment:
| Q |
1 |
gtgtgtgaatgtgagattttcttttatccaattgaaaatacattaactgtaacttgttcat |
61 |
Q |
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| T |
23211334 |
gtgtgtgagtgcgagattttcttttatccaattgaaaatacattaactgtaacttgttcat |
23211274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 23211252 - 23211213
Alignment:
| Q |
52 |
acttgttcatataatttatcataatatatctgaagtcgtg |
91 |
Q |
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| T |
23211252 |
acttgttcatataatttatcataatatatctgaagtcgtg |
23211213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 164 - 359
Target Start/End: Complemental strand, 28358372 - 28358177
Alignment:
| Q |
164 |
cttaaagatcatgagatgtaagctagtataaaactcatcactctaatattgtaatcttttcaacacttcctctcttttgatttaagttgaaacataatag |
263 |
Q |
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||||| || ||| |||| ||||||||||||| |||||||| ||||||| | |||||||||| | || ||||||||||||| ||||| | ||||||||| |
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| T |
28358372 |
cttaatgaccataagatataagctagtataacactcatcaatctaatacttcgatcttttcaatattttctctcttttgattgaagttcacacataatag |
28358273 |
T |
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| Q |
264 |
atctcatataaagttacatgacttattaaaatatcagcaaataagagatcgagtattgaaaatagagtattaaagtgaatgtgactaacattattt |
359 |
Q |
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| T |
28358272 |
atctcacataaagtgacatgacttgttgaaatatcaacaaataagggattgaatattgaaaagatattattaaagtgaatgtcactaacattattt |
28358177 |
T |
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