View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_20 (Length: 370)
Name: NF7768_low_20
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 45459672 - 45460015
Alignment:
| Q |
11 |
agatggacatcattaggaagcgccattttatgcgcagcaggtgggatttgtctattattttttatgaacaaaaaatgatcaccaagtgattgttaattag |
110 |
Q |
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| T |
45459672 |
agatggagattattaggaagcgccattttatgcgcagcaggtgggatttgtctattattttttatgaacaaaaaataatcaccaagtgattgttaattag |
45459771 |
T |
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| Q |
111 |
aattgttttcgaggactaatatcttgctctacaaattttgcagggtcagaggcaatgtttgcaggcctaggccatttttccaagaaatcaatcaaggtat |
210 |
Q |
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| T |
45459772 |
aattgttttggaggactaatatcttgctctacaaattttgcagggtcagaggcaatgtttgcaggcctaggccatttttccaagaaatcaatcaaggtat |
45459871 |
T |
|
| Q |
211 |
tataatgcataccttgttctgtagttctagtaaattgattgtaattaaaaactattagtaacaacttgtgcatcgtgcatgtgcatgtgtctgttgtttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459872 |
tataatgcataccttgttctgtagttctagtaaattaattgtaattaaaaactattagtaacaacttgtgcatcgtgcatgtgcatgtgtctgttgtttg |
45459971 |
T |
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| Q |
311 |
tagattacatttatttgcttgatctatccgcttctggtgatatg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45459972 |
tagattacatttatttgcttgatctatccgcttctggtgatatg |
45460015 |
T |
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