View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7768_low_21 (Length: 364)

Name: NF7768_low_21
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7768_low_21
NF7768_low_21
[»] chr2 (8 HSPs)
chr2 (18-182)||(9788523-9788690)
chr2 (199-340)||(28401081-28401224)
chr2 (199-343)||(16212651-16212797)
chr2 (199-353)||(37642964-37643120)
chr2 (199-342)||(16084093-16084238)
chr2 (199-274)||(36069551-36069627)
chr2 (199-274)||(35487308-35487383)
chr2 (199-235)||(3952772-3952808)
[»] chr8 (6 HSPs)
chr8 (199-352)||(44083531-44083684)
chr8 (199-273)||(40471279-40471353)
chr8 (199-273)||(15148181-15148255)
chr8 (199-274)||(40467289-40467365)
chr8 (222-274)||(23941804-23941856)
chr8 (199-270)||(27083076-27083148)
[»] chr3 (9 HSPs)
chr3 (199-352)||(17605341-17605494)
chr3 (199-353)||(45683641-45683797)
chr3 (199-343)||(20823025-20823164)
chr3 (199-352)||(42675957-42676112)
chr3 (199-273)||(36708351-36708425)
chr3 (199-273)||(15484383-15484457)
chr3 (199-273)||(18369556-18369630)
chr3 (199-274)||(38926249-38926324)
chr3 (240-276)||(54440714-54440750)
[»] chr7 (9 HSPs)
chr7 (199-352)||(18766876-18767029)
chr7 (199-322)||(25185732-25185855)
chr7 (199-280)||(15765488-15765569)
chr7 (199-340)||(8770900-8771043)
chr7 (199-287)||(34458743-34458832)
chr7 (199-352)||(41800921-41801076)
chr7 (199-261)||(48620203-48620265)
chr7 (199-269)||(18670636-18670706)
chr7 (240-275)||(6909556-6909591)
[»] chr5 (11 HSPs)
chr5 (199-352)||(11817258-11817411)
chr5 (199-352)||(38356938-38357088)
chr5 (199-340)||(3169056-3169198)
chr5 (199-338)||(19182366-19182501)
chr5 (199-344)||(2893655-2893802)
chr5 (199-273)||(34311664-34311738)
chr5 (199-252)||(29740746-29740799)
chr5 (200-343)||(12904383-12904528)
chr5 (199-273)||(35055471-35055545)
chr5 (199-273)||(35072213-35072287)
chr5 (263-340)||(29736168-29736246)
[»] scaffold0006 (1 HSPs)
scaffold0006 (200-352)||(41601-41756)
[»] chr6 (10 HSPs)
chr6 (199-280)||(1550806-1550887)
chr6 (199-287)||(21548314-21548403)
chr6 (199-287)||(6004434-6004523)
chr6 (199-352)||(6007964-6008119)
chr6 (199-287)||(24378243-24378332)
chr6 (199-352)||(26010338-26010493)
chr6 (199-273)||(9564836-9564907)
chr6 (199-274)||(23066650-23066726)
chr6 (199-274)||(31297749-31297825)
chr6 (199-274)||(11454552-11454628)
[»] chr4 (4 HSPs)
chr4 (199-340)||(46639521-46639664)
chr4 (199-353)||(55223117-55223273)
chr4 (199-352)||(26693394-26693548)
chr4 (199-273)||(50451546-50451620)
[»] chr1 (2 HSPs)
chr1 (199-342)||(43510319-43510464)
chr1 (199-274)||(34854239-34854314)
[»] scaffold0014 (1 HSPs)
scaffold0014 (199-342)||(72232-72377)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 9788690 - 9788523
Alignment:
Q  18 aaaatgttgttatctattgtacagatctccatgttattttctcaggggtttttcaatagagagaatagtattgatcc---tagaacataaattctacaaa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  9788690 aaaatgttgttatctattgtacagatctccatgttattttctcaggggtttttcaatagagagaatagtattgatccccctagaacataaattctacaaa 9788591  T
Q  115 agtttattcaagtgaaaactagctctttagatagagtaatagttgcgtaacacttacctataataata 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788590 agtttattcaagtgaaaactagctctttagatagagtaatagttgcgtaacacttacctataataata 9788523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 199 - 340
Target Start/End: Complemental strand, 28401224 - 28401081
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta-acaaca 296  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||| | ||||||    
T  28401224 gaaatcaaaatgaaattatataacacaccacacagcaatatccaagcacaaggtatgcctaggataccactaaaagttacaagagttaaagaacacaaca 28401125  T
Q  297 aacagag-gtttacactaggtagtcaaccccaaacaagcaaaagg 340  Q
    || |||| | ||||||||| ||||||| |||||||||||||||||    
T  28401124 aa-agagagattacactagatagtcaaacccaaacaagcaaaagg 28401081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 199 - 343
Target Start/End: Original strand, 16212651 - 16212797
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta-acaaca 296  Q
    ||||||||||||||||||||||||||| ||| ||||| | |||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||    
T  16212651 gaaatcaaaatgaaattatataacacaccaagcagcagtttccaagcacaaggtctgcctaggataccactaaaagttacaagagtttaagtatacaaca 16212750  T
Q  297 aacagaggtttacactaggtagtc-aaccccaaacaagcaaaagggtc 343  Q
    |||||||| ||||||||| ||| | || | ||||||||||||| ||||    
T  16212751 aacagagg-ttacactagttagccaaagctcaaacaagcaaaatggtc 16212797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 37642964 - 37643120
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta-acaaca 296  Q
    ||||||||||||||||||||||||||| ||||||||  | ||||| ||||||||||| |||||||||||||||||  ||||| | |||||||| |||| |    
T  37642964 gaaatcaaaatgaaattatataacacaccaaacagcggtttccaaacacaaggtgtgtctaggataccactaaaagttacaaaattttaagtatacaata 37643063  T
Q  297 aacagaggtttacactaggtagtc-aaccccaaacaagcaaaagggtcggaacaccaa 353  Q
    ||| |||| ||||||||| ||| | || |||||||||||||||||||| || ||||||    
T  37643064 aactgagg-ttacactagttagccaaagcccaaacaagcaaaagggtctgaccaccaa 37643120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 342
Target Start/End: Complemental strand, 16084238 - 16084093
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa-tacaagagtttaagta-acaaca 296  Q
    ||||||||||||||||||||||| ||| ||| |  || |  ||||||| ||| ||||||||||||||||||||||| |||||||||| ||| | ||||||    
T  16084238 gaaatcaaaatgaaattatataatacaccaagcgtcagttcccaagcataagctgtgcctaggataccactaaaaattacaagagttaaagaatacaaca 16084139  T
Q  297 aacagaggtttacactaggtagtc-aaccccaaacaagcaaaagggt 342  Q
    |||||||| ||||||||| ||||| || | ||||||||| |||||||    
T  16084138 aacagagg-ttacactagttagtcaaagctcaaacaagctaaagggt 16084093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 36069627 - 36069551
Alignment:
Q  199 gaaatcaaaatgaaattatataac-acatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    ||||||||||||||||||||| || ||| ||| ||||| |  ||||||||||||||||||||||| |||||||||||    
T  36069627 gaaatcaaaatgaaattatattaccacaacaatcagcagttcccaagcacaaggtgtgcctaggagaccactaaaaa 36069551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 35487308 - 35487383
Alignment:
Q  199 gaaatcaaaatgaaattatataac-acatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    ||||||||||||||||||||| || ||| ||| ||||| | || ||||| ||||||||||||||| |||||||||||    
T  35487308 gaaatcaaaatgaaattatattaccacaacaatcagcagt-tcaaagcataaggtgtgcctaggagaccactaaaaa 35487383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 3952772 - 3952808
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagca 235  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  3952772 gaaatcaaaatgaaattatataacacaccaagcagca 3952808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 199 - 352
Target Start/End: Complemental strand, 44083684 - 44083531
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 298  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44083684 gaaatcaaaataaaattatataacacaccaaacagcaatatccaaacataaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 44083585  T
Q  299 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44083584 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaccacca 44083531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 40471353 - 40471279
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||    
T  40471353 gaaatcaaaatgaaattatataacacaccacacagcaatatccaaacacaaggtatgcctaggataccactaaaa 40471279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 15148255 - 15148181
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    ||||| ||||||||||||||||||||| ||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  15148255 gaaattaaaatgaaattatataacacaccaaacagcaatttccaagcataagatgtgcctaggataccactaaaa 15148181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 40467289 - 40467365
Alignment:
Q  199 gaaatcaaaatgaaattatataac-acatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    |||||||||||||||||||||||| ||| ||| ||||| |  |||||||||||||||||||| || |||||||||||    
T  40467289 gaaatcaaaatgaaattatataaccacaacaatcagcagttcccaagcacaaggtgtgcctatgagaccactaaaaa 40467365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 23941804 - 23941856
Alignment:
Q  222 cacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    |||| |||| |||| | |||| ||||||||||||||||||| |||||||||||    
T  23941804 cacaacaaaaagcagtttccatgcacaaggtgtgcctaggagaccactaaaaa 23941856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 27083076 - 27083148
Alignment:
Q  199 gaaatcaaaatgaaattatataaca-catcaaacagcaatatccaagcacaaggtgtgcctaggataccacta 270  Q
    |||| ||||||| |||||||||||| ||  ||| |||| |  ||||||||||||||||||||||| |||||||    
T  27083076 gaaaccaaaatggaattatataacaacagtaaagagcagttcccaagcacaaggtgtgcctaggagaccacta 27083148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 199 - 352
Target Start/End: Complemental strand, 17605494 - 17605341
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 298  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17605494 gaaatcaaaatgaaattatataacacaccaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagaaacaacaaa 17605395  T
Q  299 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || |||||    
T  17605394 cagaggtttacactagttagtcaaccccaaacaagcaaaagggtcagaccacca 17605341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 45683641 - 45683797
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta-acaac- 295  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||| | |||||     
T  45683641 gaaatcaaaatgaaattatataacacaccacacagcaatatccaagcacaaggtgtgcctaggataccactaaaagttacaagagttaaagaacacaaca 45683740  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacaccaa 353  Q
    ||||||| | ||||||||| ||||||| ||||||||||||||||| || || ||||||    
T  45683741 aaacaga-gattacactagatagtcaaacccaaacaagcaaaaggatctgaccaccaa 45683797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 199 - 343
Target Start/End: Complemental strand, 20823164 - 20823025
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagta-acaacaa 297  Q
    ||||||||||||||||||||||| ||| ||| |||||    ||||||||||| |||||||||||||||||     ||||||||||||||  | |||||||    
T  20823164 gaaatcaaaatgaaattatataatacaccaaccagcagatcccaagcacaagatgtgcctaggataccac-----atacaagagtttaataatacaacaa 20823070  T
Q  298 acagaggtttacactaggtagtcaaccccaaacaagcaaaagggtc 343  Q
    |||||| || ||||||||||| ||| ||||||||||| ||||||||    
T  20823069 acagagatt-acactaggtagccaagcccaaacaagccaaagggtc 20823025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 199 - 352
Target Start/End: Complemental strand, 42676112 - 42675957
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaac 295  Q
    |||||||||||| ||||| |||||||| ||||||||| |  ||||||||||||||||||||||| ||||||||||  |||||||||||||  |  |||||    
T  42676112 gaaatcaaaatggaattaaataacacaccaaacagcagtccccaagcacaaggtgtgcctaggaaaccactaaaagttacaagagtttaaaaaatacaac 42676013  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    || |||| | | ||||||| ||| ||| || ||||||||||||||||| || |||||    
T  42676012 aaccaga-gataacactagctagccaagcctaaacaagcaaaagggtctgaccacca 42675957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 36708351 - 36708425
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    ||||||||||||||||||||||||||| ||| ||||| |  |||||||||| |||||||||||||||||||||||    
T  36708351 gaaatcaaaatgaaattatataacacaccaagcagcagttcccaagcacaatgtgtgcctaggataccactaaaa 36708425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 15484457 - 15484383
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    ||||| |||||||||||||||| |||||||| ||||| |  ||||||||||| ||||||||||||||||||||||    
T  15484457 gaaattaaaatgaaattatataccacatcaagcagcagttcccaagcacaagatgtgcctaggataccactaaaa 15484383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 18369630 - 18369556
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    |||||||||||||||||||||| || | |||||||||||  ||||||| |||||||||||| |||||||||||||    
T  18369630 gaaatcaaaatgaaattatatatcataccaaacagcaattcccaagcataaggtgtgcctaagataccactaaaa 18369556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 38926249 - 38926324
Alignment:
Q  199 gaaatcaaaatgaaattatataac-acatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    |||||||||| |||||||||| || ||| ||| ||||| | |||||||| ||||| ||||||||| |||||||||||    
T  38926249 gaaatcaaaa-gaaattatattaccacaacaatcagcagtttccaagcataaggtatgcctaggagaccactaaaaa 38926324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 54440750 - 54440714
Alignment:
Q  240 ccaagcacaaggtgtgcctaggataccactaaaaata 276  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  54440750 ccaagcacaaggtgtgcctaggaaaccactacaaata 54440714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 18766876 - 18767029
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 298  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  18766876 gaaatcaaaatgaaattatataacataccaaacagcaatatccaagcacaaggtgtgcctaggatactactaaaaatacaagagtttaaggaacaacaaa 18766975  T
Q  299 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  18766976 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggttggaccacca 18767029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 25185855 - 25185732
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 298  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25185855 gaaatcaaaatgaaattatataacacaccaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 25185756  T
Q  299 cagaggtttacactaggtagtcaa 322  Q
    ||||||||||||||||||||||||    
T  25185755 cagaggtttacactaggtagtcaa 25185732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 280
Target Start/End: Complemental strand, 15765569 - 15765488
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaag 280  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15765569 gaaatcaaaatgaaattatataacacaccaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaag 15765488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 199 - 340
Target Start/End: Original strand, 8770900 - 8771043
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccacta-aaaatacaagagtttaagta-acaac- 295  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||  |||||||||| ||| | |||||     
T  8770900 gaaatcaaaatgaaattatataacacaccacacagcaatatccaagcataaggtatgcctaggataccactagaagttacaagagttaaagaacacaaca 8770999  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagg 340  Q
    ||||||| | ||||||||| ||||||| |||||||||||||||||    
T  8771000 aaacaga-gattacactagatagtcaaacccaaacaagcaaaagg 8771043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 34458832 - 34458743
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaa 287  Q
    |||||||||||| ||||| |||||||| ||||||||| |  ||||||||||||||||||||||| ||||||||||  |||||||||||||    
T  34458832 gaaatcaaaatggaattaaataacacaccaaacagcagttcccaagcacaaggtgtgcctaggaaaccactaaaagttacaagagtttaa 34458743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 41800921 - 41801076
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaac 295  Q
    |||||||||||| ||||| |||||||| ||||||||| |  ||||||||||||||||| ||||| ||||||||||  |||||||||||||  |  |||||    
T  41800921 gaaatcaaaatggaattaaataacacaccaaacagcagtccccaagcacaaggtgtgcttaggaaaccactaaaagttacaagagtttaaaaaatacaac 41801020  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    || |||| | | ||||||| ||| ||| || ||||||||||||||||| || |||||    
T  41801021 aaccaga-gataacactagctagccaagcctaaacaagcaaaagggtctgaccacca 41801076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 48620265 - 48620203
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctagg 261  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  48620265 gaaatcaaaatgaaattatataacacaccatacagcaatatccaagcacaaggtatgcttagg 48620203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 18670636 - 18670706
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccact 269  Q
    |||||||||||||||||||||| |||| ||| ||||| |  |||||||||||||||||| |||| ||||||    
T  18670636 gaaatcaaaatgaaattatatatcacaccaagcagcagttcccaagcacaaggtgtgccaaggaaaccact 18670706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 275
Target Start/End: Original strand, 6909556 - 6909591
Alignment:
Q  240 ccaagcacaaggtgtgcctaggataccactaaaaat 275  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6909556 ccaagcacaaggtgtgcctaggagaccactaaaaat 6909591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 11817258 - 11817411
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 298  Q
    ||||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11817258 gaaatcaaaatgaaaataaataacacaccaaacagcaatgtccaagcataaggtgtgcctaggataccactaaaaatacaagagtttaaggaacaacaaa 11817357  T
Q  299 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11817358 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaccacca 11817411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 38356938 - 38357088
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaagagtttaagtaacaacaaa 298  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  38356938 gaaatcaaaatgaaattatataacac--caaacagcaatacccaagcacaaggtgtgcctagaataccactaaaa-tacaagagtttaagtaacaacaaa 38357034  T
Q  299 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38357035 cagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaccacca 38357088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 340
Target Start/End: Complemental strand, 3169198 - 3169056
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaa-aaatacaagagtttaagta-acaaca 296  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| | ||||||    
T  3169198 gaaatcaaaatgaaattatataacacaccaaacagcaatatccaagcacaaggtgtgcctaggataccactaagaattacaagggtttaagaacacaaca 3169099  T
Q  297 aacagaggtttacactaggtagtcaaccccaaacaagcaaaagg 340  Q
    ||||||   ||||||||| ||||||| |||||||||||||||||    
T  3169098 aacaga-tattacactagttagtcaaacccaaacaagcaaaagg 3169056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 199 - 338
Target Start/End: Complemental strand, 19182501 - 19182366
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa-tacaagagtttaagta-acaaca 296  Q
    |||||||||||||||||| ||||||||     |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||    
T  19182501 gaaatcaaaatgaaattaaataacaca-----cagcaacatccaagcacaaggtgtgcctaggataccactaaaaattacaagagtttaagaacacaaca 19182407  T
Q  297 aacagaggtttacactaggtagtcaaccccaaacaagcaaaa 338  Q
    |||||| | ||||||||| ||||||| | |||||||||||||    
T  19182406 aacaga-gattacactagttagtcaaactcaaacaagcaaaa 19182366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 199 - 344
Target Start/End: Original strand, 2893655 - 2893802
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaac 295  Q
    |||||||||||| ||||| |||||||| ||||||||| |  ||||||||||||||||||||||| ||||||||||  |||||||||||||  |  |||||    
T  2893655 gaaatcaaaatggaattaaataacacaccaaacagcagttcccaagcacaaggtgtgcctaggaaaccactaaaagttacaagagtttaaaaaatacaac 2893754  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcg 344  Q
    || |||| | | ||||||| ||| ||| || ||||||||||||||||||    
T  2893755 aaccaga-gataacactagctagccaaacctaaacaagcaaaagggtcg 2893802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 34311664 - 34311738
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    ||||| ||||||||||||||||||||| ||| ||||| |  |||||||||||||||| |||||||||||||||||    
T  34311664 gaaattaaaatgaaattatataacacaccaagcagcagttcccaagcacaaggtgtgtctaggataccactaaaa 34311738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 29740799 - 29740746
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggt 252  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||    
T  29740799 gaaatcaaaatgaaattatataacacaccaaacagtaatatccaagcataaggt 29740746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 343
Target Start/End: Original strand, 12904383 - 12904528
Alignment:
Q  200 aaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaaca 296  Q
    ||||||||||| ||||| |||||||| ||||||||| |  ||||||| ||||||||| |||||  |||||||||  |||||||||||||  |  ||||||    
T  12904383 aaatcaaaatggaattaaataacacaccaaacagcagtccccaagcataaggtgtgcttaggaacccactaaaagttacaagagtttaaaaaatacaaca 12904482  T
Q  297 aacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtc 343  Q
    | |||| | | ||||||| ||| ||| || |||||||||||||||||    
T  12904483 atcaga-gataacactagctagccaagcctaaacaagcaaaagggtc 12904528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 35055471 - 35055545
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    |||||||||||||||||||||| |||| ||| | | | |  |||||||||||||||||||| |||||||||||||    
T  35055471 gaaatcaaaatgaaattatataccacaccaagccgtagttcccaagcacaaggtgtgcctaagataccactaaaa 35055545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 35072213 - 35072287
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    |||||||||||||||||||||| |||| ||| | | | |  |||||||||||||||||||| |||||||||||||    
T  35072213 gaaatcaaaatgaaattatataccacaccaagccgtagttcccaagcacaaggtgtgcctaagataccactaaaa 35072287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 29736246 - 29736168
Alignment:
Q  263 taccactaaaaat-acaagagtttaagta-acaacaaacagaggtttacactaggtagtcaaccccaaacaagcaaaagg 340  Q
    ||||||||||||| ||||||||||||| | |||||||| |||  || ||||||| ||||||| |||||||||||||||||    
T  29736246 taccactaaaaattacaagagtttaagaacacaacaaagagatatt-acactagttagtcaaacccaaacaagcaaaagg 29736168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 200 - 352
Target Start/End: Original strand, 41601 - 41756
Alignment:
Q  200 aaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaa-aaatacaagagtttaagta--acaaca 296  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||  |  ||||||    
T  41601 aaatcaaaatgaaattatataacacaccaaacagtaatatccaagcacaaggtgtgcctaggatatcactaataaatacaagagtttaaagaacacaaca 41700  T
Q  297 aacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||    
T  41701 aacagaggattacactagttagtcaaccccaaacaagcaaaaggatcggaccacca 41756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 199 - 280
Target Start/End: Original strand, 1550806 - 1550887
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaag 280  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1550806 gaaatcaaaatgaaattatataacacaccaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaatacaag 1550887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 21548314 - 21548403
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaa 287  Q
    |||||||||||||||||| |||||||| ||||||||| |  ||||||||||||||||| ||||| ||||||||||  |||||||||||||    
T  21548314 gaaatcaaaatgaaattaaataacacaccaaacagcagtccccaagcacaaggtgtgcttaggaaaccactaaaagttacaagagtttaa 21548403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 6004434 - 6004523
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaa 287  Q
    |||||||||||| |||||||||||||| ||||||| | |   |||||||||||||||||||||| ||||||||||  |||||||||||||    
T  6004434 gaaatcaaaatggaattatataacacaccaaacagtagttctcaagcacaaggtgtgcctaggaaaccactaaaagttacaagagtttaa 6004523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 6007964 - 6008119
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaac 295  Q
    |||||||||||| |||||||||||||| ||||||  | |   |||||||||||||||||||||| ||||||||||  |||||||||||||  |  |||||    
T  6007964 gaaatcaaaatggaattatataacacaccaaacattagttctcaagcacaaggtgtgcctaggaaaccactaaaagttacaagagtttaaagactacaac 6008063  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    || |||| | | ||||||| ||| ||| || ||||||||||||||||| || |||||    
T  6008064 aaccaga-gataacactagttagccaagcctaaacaagcaaaagggtctgaccacca 6008119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 24378243 - 24378332
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaa 287  Q
    |||||||||||| ||||| |||||||| ||||||||| |  ||||||| |||||||||||| || ||||||||||  |||||||||||||    
T  24378243 gaaatcaaaatggaattaaataacacaccaaacagcagtccccaagcataaggtgtgcctaagaaaccactaaaagttacaagagtttaa 24378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 26010338 - 26010493
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaac 295  Q
    |||||||||||| ||||| ||||||||  ||| |||| |  ||||||||||||||||||||||| ||||||||||  ||||||| ||||| ||  ||| |    
T  26010338 gaaatcaaaatggaattaaataacacactaaatagcagtccccaagcacaaggtgtgcctaggaaaccactaaaagttacaagaatttaaataatacacc 26010437  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    || |||| | | ||||||| ||| ||| || ||||||||||||||||| || |||||    
T  26010438 aaccaga-gataacactagctagccaagcctaaacaagcaaaagggtctgaccacca 26010493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 9564836 - 9564907
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    |||||||||||||||||||||| |||| ||| |||   | | |||||| ||||||||||||||||| ||||||||    
T  9564836 gaaatcaaaatgaaattatatatcacaccaagcag---ttttcaagcataaggtgtgcctaggatatcactaaaa 9564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 23066726 - 23066650
Alignment:
Q  199 gaaatcaaaatgaaattatataac-acatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    ||||||||||||||||||||| || ||| ||| ||||| |  |||||||||||||||| |||||| ||| |||||||    
T  23066726 gaaatcaaaatgaaattatattaccacaacaatcagcagttcccaagcacaaggtgtgactaggagaccgctaaaaa 23066650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 31297825 - 31297749
Alignment:
Q  199 gaaatcaaaatgaaattatataac-acatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    |||||||||||||||||||||||| ||| ||| ||||| |  |||||||||| ||||||| |||| ||| |||||||    
T  31297825 gaaatcaaaatgaaattatataactacaacaatcagcagttcccaagcacaatgtgtgcccaggagaccgctaaaaa 31297749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 274
Target Start/End: Original strand, 11454552 - 11454628
Alignment:
Q  199 gaaatcaaaatgaaattatataaca-catcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    |||||| |||||||||||||||||  || ||| ||||  | |||||| ||||||||||||||||| | |||||||||    
T  11454552 gaaatccaaatgaaattatataaccgcaacaatcagcggtttccaagtacaaggtgtgcctaggagatcactaaaaa 11454628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 199 - 340
Target Start/End: Complemental strand, 46639664 - 46639521
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta-acaac- 295  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| ||||||||||||  |||||||||| ||| | |||||     
T  46639664 gaaatcaaaatgaaattatataacacaccacacagcaatatccaagcacaaggtatgcctagaataccactaaaagttacaagagttaaagaacacaaca 46639565  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagg 340  Q
    ||||||| | ||||||||| ||||||| |||||||||||||||||    
T  46639564 aaacaga-gattacactagatagtcaaacccaaacaagcaaaagg 46639521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 199 - 353
Target Start/End: Original strand, 55223117 - 55223273
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta-acaaca 296  Q
    ||||||||||||||||||||||||||| ||| ||||  |  |||||||||||||||||||||||||| |||||||  |||||||||| ||| | ||||||    
T  55223117 gaaatcaaaatgaaattatataacacaccaagcagcggttcccaagcacaaggtgtgcctaggatacaactaaaagttacaagagttaaagaatacaaca 55223216  T
Q  297 aacagaggtttacactaggtagtc-aaccccaaacaagcaaaagggtcggaacaccaa 353  Q
    |||||||| ||||||||| ||| | || ||||||||||| |||||||| || ||||||    
T  55223217 aacagagg-ttacactagttagccaaagcccaaacaagctaaagggtctgaccaccaa 55223273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 352
Target Start/End: Original strand, 26693394 - 26693548
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaagta--acaac 295  Q
    |||||||||||| ||||| | |||||| ||| ||||| |  ||||||||||||||||||||||| ||||||||||  |||||||||||||  |  |||||    
T  26693394 gaaatcaaaatggaattaaa-aacacaccaaccagcagttcccaagcacaaggtgtgcctaggaaaccactaaaagttacaagagtttaaaaaatacaac 26693492  T
Q  296 aaacagaggtttacactaggtagtcaaccccaaacaagcaaaagggtcggaacacca 352  Q
    || |||| | | ||||||| ||| ||| || ||||||||||||||||| || |||||    
T  26693493 aaccaga-gataacactagctagccaaacctaaacaagcaaaagggtctgaccacca 26693548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 273
Target Start/End: Original strand, 50451546 - 50451620
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa 273  Q
    |||||||||||||||||||||| |||| ||| ||| |    ||| ||||||||| |||||| |||||||||||||    
T  50451546 gaaatcaaaatgaaattatatatcacaccaagcagtagctcccaggcacaaggtatgcctaagataccactaaaa 50451620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 342
Target Start/End: Complemental strand, 43510464 - 43510319
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtttaag-taacaaca 296  Q
    ||||||||||||||||||||||||||| ||| ||||| |  ||||||||||||||| ||||| ||||||||||||  |||||||||| | | | ||||||    
T  43510464 gaaatcaaaatgaaattatataacacaccaagcagcagttcccaagcacaaggtgtacctagaataccactaaaagttacaagagttaatgatcacaaca 43510365  T
Q  297 aacagaggtttacactaggtagtcaa-ccccaaacaagcaaaagggt 342  Q
    |||||| | ||||||||| |||||||  ||||||||| | |||||||    
T  43510364 aacaga-gattacactagctagtcaatgcccaaacaaactaaagggt 43510319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 34854314 - 34854239
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaaa 274  Q
    ||||||||||||||||||||||||||| |||| |||| |  ||||||| ||||||||||||||| |||||||||||    
T  34854314 gaaatcaaaatgaaattatataacacaccaaagagcagttcccaagcagaaggtgtgcctaggagaccactaaaaa 34854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 342
Target Start/End: Complemental strand, 72377 - 72232
Alignment:
Q  199 gaaatcaaaatgaaattatataacacatcaaacagcaatatccaagcacaaggtgtgcctaggataccactaaaa-atacaagagtt-taagtaacaaca 296  Q
    ||||||||||||||||||||||||||| ||||||||| |   |||||| ||||| |  ||||||||| | |||||  ||||||||||  ||  |||||||    
T  72377 gaaatcaaaatgaaattatataacacaccaaacagcagttctcaagcataaggtatatctaggatactattaaaagttacaagagttaaaaaaaacaaca 72278  T
Q  297 aacagaggtttacactaggtagtcaa-ccccaaacaagcaaaagggt 342  Q
    |||||||| ||||| ||| ||| |||  ||||||||||| |||||||    
T  72277 aacagagg-ttacattagttagccaatgcccaaacaagctaaagggt 72232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University