View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_23 (Length: 337)
Name: NF7768_low_23
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 75 - 313
Target Start/End: Complemental strand, 44727529 - 44727288
Alignment:
| Q |
75 |
ttattccgaggaacacatcggtgccaaccaggat---ggatatagtattgacaactattcatgataatcaaactgcggcattgattgttgtttacgaagg |
171 |
Q |
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| T |
44727529 |
ttattccaaggaacacaccagtgccaaccatgaattcggatatacttttgacaactattcatgataatcaaactgcggcattgatcgttgtttacgaagg |
44727430 |
T |
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| Q |
172 |
tgagggacagaaggttgaagaaaaccatcttttaggatatctcaaactaactaaaatacctaaagcaccaaaaggttttcttaatatcattgtttccatg |
271 |
Q |
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| T |
44727429 |
tgagggacagaaggttgaagaaaaccaacttttaggatatttcaaactaactgaaatacctaaagcaccaaaaggttttcctaaaatcattgtttccatg |
44727330 |
T |
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| Q |
272 |
gacatagacaataaaagcgcgttgggagttactgtttttctt |
313 |
Q |
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| T |
44727329 |
gacatagacgataagagcgcgttgagagttactgcttttctt |
44727288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 47843400 - 47843539
Alignment:
| Q |
72 |
ctgttattccgaggaacacatcggtgccaaccaggatggatatagtattgacaactattcatgataatcaaactgcggcattgattgttgtttacgaagg |
171 |
Q |
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| T |
47843400 |
ctgtaattccgaggaacacatcgatgccaacaacgagggttatggatttcacaactattcatgataatcaaactgaggcattgatccttgtctacgaagg |
47843499 |
T |
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| Q |
172 |
tgagggacagaaggttgaagaaaaccatcttttaggatat |
211 |
Q |
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| T |
47843500 |
tgagggacagaaggctgaagaaaaccaccttttgggatat |
47843539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 135 - 246
Target Start/End: Complemental strand, 47844974 - 47844863
Alignment:
| Q |
135 |
ataatcaaactgcggcattgattgttgtttacgaaggtgagggacagaaggttgaagaaaaccatcttttaggatatctcaaactaactaaaatacctaa |
234 |
Q |
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| T |
47844974 |
ataatcaaactgcagcattgatcattgtctacgaaggtgaggcacagaaggttgaagagaatcaccttttgggatatttcaaaataactgaaatacctga |
47844875 |
T |
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| Q |
235 |
agcaccaaaagg |
246 |
Q |
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| T |
47844874 |
agcaccaaaagg |
47844863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 42926471 - 42926393
Alignment:
| Q |
122 |
acaactattcatgataatcaaactgcggcattgattgttgtttacgaaggtgagggacagaaggttgaagaaaaccatc |
200 |
Q |
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| T |
42926471 |
acaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctaaagaaacccatc |
42926393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 808595 - 808689
Alignment:
| Q |
122 |
acaactattcatgataatcaaactgcggcattgattgttgtttacgaaggtgagggacagaaggttgaagaaaaccatcttttaggatatctcaa |
216 |
Q |
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| T |
808595 |
acaactattcatgataatcaaactgaggcattgatacttgtgtacgaaggtgagggaaagaaggcagaagaaaaccacttgttaggatatttcaa |
808689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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