View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_25 (Length: 324)
Name: NF7768_low_25
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 22938797 - 22938595
Alignment:
| Q |
1 |
actatgtattttctgggcagaatcaacgtcaatgtannnnnnnctgggtaaatgtttaagcttttgaaagatggagttaatcaacccttttttgtctgga |
100 |
Q |
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| T |
22938797 |
actatgtattttctgggcagaatcaacgtcaatgtatttttt-ctaggtaaatgtttaagcttttgaaagatggagttaatcaacccttttttgtccggg |
22938699 |
T |
|
| Q |
101 |
caa-gtttaagtttttgtaagcttacgttagtattcaagtaacttgcggaagctttaggggttttgaaagacttggacacgacacttccctcctgctaat |
199 |
Q |
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||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||| ||| ||| |
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| T |
22938698 |
caatgtttaagtttttgtatgcttacattagtattcaagtaacttgcggaagctttagggattctgaaagacttggacacggcacttccctcatgcaaat |
22938599 |
T |
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| Q |
200 |
ccat |
203 |
Q |
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|||| |
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| T |
22938598 |
ccat |
22938595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 22938522 - 22938457
Alignment:
| Q |
242 |
gataatgtcatagaagccgtatgtcattatggacatatgtttatcacataatttctgggtaaattt |
307 |
Q |
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||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
22938522 |
gataatgacatagaagtcgtatgtcattctggacatatgtttatcacatattttctgggtaaattt |
22938457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 15499765 - 15499933
Alignment:
| Q |
1 |
actatgtattttctgggcagaatcaacgtcaatgtannnnnnnctgggtaaatgtttaagcttttgaaagatggagttaatcaacccttttttgtctgga |
100 |
Q |
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|||||||||||| |||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
15499765 |
actatgtattttttgggcagaatcaacatcaatgtatttttt-ctaggtaaatctttaagcttttgaaagatggagttaatcaaccctttttggtttggg |
15499863 |
T |
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| Q |
101 |
caa-gtttaagtttttgtaagcttacgttagtattcaagtaacttgcggaagctttaggggttttgaaag |
169 |
Q |
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||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
15499864 |
caatgtttaagtttttgtaagcgtacgtcagtattcaagtaacttgcggaagctttaagggttctgaaag |
15499933 |
T |
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