View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7768_low_26 (Length: 322)
Name: NF7768_low_26
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 4936501 - 4936181
Alignment:
| Q |
1 |
ttctctcattcacccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacnnnnnnnnn-----gggcatttagatgttatgc |
95 |
Q |
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| T |
4936501 |
ttctctcattttcccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacaaaagaaaaaaaaagggcatttagatgttatgc |
4936402 |
T |
|
| Q |
96 |
agtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggtaatcatgttcgaggaactg |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4936401 |
agtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacagaaggtaatcatgttcgaggaactg |
4936302 |
T |
|
| Q |
196 |
tcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaaccttggttcaaacttgaca |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4936301 |
tcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccatttcggctagacctaaccttggttcaaacttgaca |
4936202 |
T |
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| Q |
296 |
gttgacacctgttcttctcac |
316 |
Q |
| |
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|||||||||||||||| |||| |
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| T |
4936201 |
gttgacacctgttcttatcac |
4936181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 4952206 - 4951881
Alignment:
| Q |
1 |
ttctctcattcacccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtactaaacnnnnnnnnn----------gggcatttagatgt |
90 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
4952206 |
ttctctcatttgcccttcttctcctcattgcaaaaacctgttacaaagtttattgttagtaccaaacaaaagaaagaaaaaaaaaagggcatttagatgt |
4952107 |
T |
|
| Q |
91 |
tatgcagtttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggtaatcatgttcgagg |
190 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952106 |
tatgcactttaacatatatgaaatgacccaggccacaacacttgacatctcttcttttcttcctacagattacctccacggaaggtaatcatgttcgagg |
4952007 |
T |
|
| Q |
191 |
aactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaaccttggttcaaact |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4952006 |
aactgtcgagcactaaatgtggatagctctcccaactaggattcaaactttaggtctggaagactagccacttcggctagacctaaccttggttcaaact |
4951907 |
T |
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| Q |
291 |
tgacagttgacacctgttcttctcac |
316 |
Q |
| |
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||||||||||| ||| ||||| |||| |
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| T |
4951906 |
tgacagttgactcctattcttatcac |
4951881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 27037312 - 27037268
Alignment:
| Q |
197 |
cgagcactaaatgtggatagctctcccaactaggattcaaacttt |
241 |
Q |
| |
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|||||||||||||||| || |||||||| |||||| ||||||||| |
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| T |
27037312 |
cgagcactaaatgtgggtacctctcccagctaggagtcaaacttt |
27037268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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