View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7768_low_29 (Length: 305)
Name: NF7768_low_29
Description: NF7768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7768_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 20357415 - 20357126
Alignment:
| Q |
1 |
ataatactatcattttaaataatttaatatatcagtttaaatgttttgtcttcattgacacctttggcatccataaagcaaagttgatttgtcgaagata |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20357415 |
ataatactatcatttaaaataatttaatatatcagtttaaatgttttgtcttcattgacacctttggcatccataaagcaaagttgatttgtcgaagata |
20357316 |
T |
|
| Q |
101 |
gaagcctgactcacatactatcagttataactacattattttgtctgtctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20357315 |
gaagcctgaatcacatactatcagttataactacattattttgtctgtctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttc |
20357216 |
T |
|
| Q |
201 |
tatttatgcaggccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacagatcaaggggctacttatgttgaactt |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20357215 |
tatttatgca-gccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacagatcaaggggctacttatgttgaactt |
20357126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 20354579 - 20354840
Alignment:
| Q |
3 |
aatactatcattttaaataatttaatatatcagtttaaatgttttgtcttcattgacacctttggcatccataaagcaaagttgatttgtcgaagataga |
102 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20354579 |
aatactatcatttaaagtaatttaatatatcagtttaaatgttttgtcttcattgacacctttggcatccataaagcaaagttgatttgtcgaagattga |
20354678 |
T |
|
| Q |
103 |
agcctgactcacatactatcagttataactacattattttgtctgtctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttcta |
202 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20354679 |
agcctgactcatatactatcagttataactacattattttgtcggtctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttcta |
20354778 |
T |
|
| Q |
203 |
tttatgcaggccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacag |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20354779 |
tttatgca-gccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacag |
20354840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 5286027 - 5285758
Alignment:
| Q |
3 |
aatactatcattttaaataatttaatatatcagtttaaatgttttgtcttcattgacacctttggcatccataaagcaaagttgatttgtcgaagataga |
102 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5286027 |
aatactatcatttaaaataatttaatatatcagtttaaatgttttgtcttcattgacacctctggcatccataaagcaaagttgatttgtcgaagataga |
5285928 |
T |
|
| Q |
103 |
agcctgactcacatactatcagttataactacattattttgtctgtctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttcta |
202 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5285927 |
agcctgaatcacatactataagttataactacattattttgtctatctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttcta |
5285828 |
T |
|
| Q |
203 |
tttatgcaggccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacagatcaaggg |
273 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5285827 |
tttatgca-gccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacagatcaaggg |
5285758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5283163 - 5283426
Alignment:
| Q |
1 |
ataatactatcattttaaataatttaatatatcagtttaaatgttttgtcttcattgacacctttggcatccataaagcaaagttgatttgtcgaagata |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |
|
|
| T |
5283163 |
ataatactatcattaaaaataatttaatatatctttttaaatgttttgtcttcattgacacctttggcatccaataagctaagttgatttgttgaagata |
5283262 |
T |
|
| Q |
101 |
gaagcctgactcacatactatcagttataactacattattttgtctgtctatgattctctgcataacaatgcaacaaaacacaagatatagcaagcgttc |
200 |
Q |
| |
|
||||||| |||||| | | ||||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| || | |
|
|
| T |
5283263 |
gaagcctaactcactttcaatcagttatcactacattattttgtctctctatgattcactgcataataatgcaacaaaacacaagatatagcaagagtac |
5283362 |
T |
|
| Q |
201 |
tatttatgcaggccagaacgtgttcaacttcaatacagttataacacgttaaagttaccaaacag |
265 |
Q |
| |
|
| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5283363 |
tgttcatgca-gccagaatgtgttcaacttcaatacagttataacacgttaaagttaccaaacag |
5283426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 34228816 - 34228720
Alignment:
| Q |
70 |
tccataaagcaaagttgatttgtcgaagatagaagcctgactcacatactatcagttataactacattattttgtctgtctatgattctctgcataa |
166 |
Q |
| |
|
|||||||| | | |||||||||| ||||||| ||||| | ||||| ||||||||||| || ||||| || ||||| ||| ||||||||||||||| |
|
|
| T |
34228816 |
tccataaaactaggttgatttgttgaagataacagccttgcccacattctatcagttatcacaacattgttctgtctctctgtgattctctgcataa |
34228720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University